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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003616
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 60 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.035s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0102529.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Glycine max] gi|356497095|ref|XP_003517399.1| chr0 43660245 43661570 +
2 domain predictions
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Lj0g3v0128679.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356508242|ref|XP_003522868.1| chr0 58166236 58169952 +
2 domain predictions
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Lj0g3v0172449.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max] gi|356574501|ref|XP_003555385.1| chr0 82853035 82858979 -
2 domain predictions
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Lj0g3v0241779.1
n.a. ASH1-like protein [Phaseolus vulgaris] gi|342209884|gb|AEL16989.1| chr0 125480301 125486508 -
3 domain predictions
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Lj0g3v0265609.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula] gi|357505017|ref|XP_003622797.1| chr0 137616300 137624390 +
3 domain predictions
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Lj0g3v0266169.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356546288|ref|XP_003541561.1| chr0 137822125 137828672 +
2 domain predictions
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Lj0g3v0308279.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356526623|ref|XP_003531916.1| chr0 160950568 160957248 +
3 domain predictions
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Lj0g3v0309989.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr0 161816987 161826481 -
3 domain predictions
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Lj1g3v0887590.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH2-like [Glycine max] gi|356507632|ref|XP_003522568.1| chr1 11315183 11328722 +
3 domain predictions
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Lj1g3v0887590.2
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH2-like [Glycine max] gi|356507632|ref|XP_003522568.1| chr1 11316000 11328722 +
3 domain predictions
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Lj1g3v3904410.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] gi|356560426|ref|XP_003548493.1| chr1 45483181 45490448 -
2 domain predictions
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Lj1g3v4059050.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356504621|ref|XP_003521094.1| chr1 48012042 48015981 +
2 domain predictions
 –
Lj1g3v5034780.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum] gi|502113957|ref|XP_004494815.1| chr1 61526566 61539647 -
3 domain predictions
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Lj2g3v0523280.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] gi|356530969|ref|XP_003534051.1| chr2 6971562 6982866 +
3 domain predictions
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Lj2g3v1828500.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356540712|ref|XP_003538829.1| chr2 27479378 27489366 -
2 domain predictions
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Lj2g3v1989010.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29682391 29694387 -
3 domain predictions
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Lj3g3v0075610.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr3 684782 697632 -
2 domain predictions
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Lj3g3v0075610.2
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr3 684782 691553 -
2 domain predictions
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Lj3g3v2441840.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi|356522510|ref|XP_003529889.1| chr3 30108466 30117187 -
3 domain predictions
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Lj3g3v2441840.2
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi|356522510|ref|XP_003529889.1| chr3 30108466 30118179 -
3 domain predictions
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Lj5g3v0528960.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508782146|gb|EOY29402.1| chr5 5835200 5847660 -
3 domain predictions
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Lj5g3v0528960.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782144|gb|EOY29400.1| chr5 5835200 5847610 -
3 domain predictions
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Lj5g3v2244670.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cicer arietinum] gi|502106852|ref|XP_004493077.1| chr5 32535927 32538525 -
3 domain predictions
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Lj6g3v0156100.1
n.a. SET domain protein [Populus trichocarpa] gi|224126633|ref|XP_002329603.1| chr6 1604629 1606162 +
2 domain predictions
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Lj6g3v1048900.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHR3-like [Glycine max] gi|356514491|ref|XP_003525939.1| chr6 11815461 11820333 +
3 domain predictions
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Lj6g3v1048900.2
n.a. PREDICTED: histone-lysine N-methyltransferase ASHR3-like, partial [Cucumis sativus] gi|449530608|ref|XP_004172286.1| chr6 11817674 11820333 +
3 domain predictions
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LotjaGi1g1v0226000_LC.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|A0A151TYG2|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC LjG1.1_chr1 52330652 52343925 +
3 domain predictions
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LotjaGi1g1v0267000.1
n.a. histone-lysine N-methyltransferase; TAIR: AT1G77300.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2; TrEMBL-Plants: tr|A0A0B2SJ73|A0A0B2SJ73_GLYSO Histone-lysine N-methyltransferase ASHH2; Found in the gene: LotjaGi1g1v0267000 LjG1.1_chr1 65255375 65270570 +
3 domain predictions
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LotjaGi1g1v0267000.2
n.a. histone-lysine N-methyltransferase; TAIR: AT1G77300.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2; TrEMBL-Plants: tr|A0A0B2SJ73|A0A0B2SJ73_GLYSO Histone-lysine N-methyltransferase ASHH2; Found in the gene: LotjaGi1g1v0267000 LjG1.1_chr1 65255375 65270570 +
3 domain predictions
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LotjaGi1g1v0267000.3
n.a. histone-lysine N-methyltransferase; TAIR: AT1G77300.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2; TrEMBL-Plants: tr|A0A0B2SJ73|A0A0B2SJ73_GLYSO Histone-lysine N-methyltransferase ASHH2; Found in the gene: LotjaGi1g1v0267000 LjG1.1_chr1 65255427 65268351 +
3 domain predictions
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LotjaGi1g1v0284200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|I1JYS9|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200 LjG1.1_chr1 69176904 69188234 -
3 domain predictions
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LotjaGi1g1v0529500.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105619940 105654969 -
3 domain predictions
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LotjaGi1g1v0529500.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105622284 105654909 -
3 domain predictions
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LotjaGi1g1v0529500.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105628474 105654797 -
3 domain predictions
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LotjaGi1g1v0598400_LC.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|K7K4X0|K7K4X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0598400_LC LjG1.1_chr1 113890642 113891944 +
2 domain predictions
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LotjaGi1g1v0633100.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633100 LjG1.1_chr1 118724052 118732969 -
2 domain predictions
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LotjaGi1g1v0655200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121468708 121473568 -
2 domain predictions
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LotjaGi1g1v0655200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
2 domain predictions
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LotjaGi1g1v0655200.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
2 domain predictions
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LotjaGi2g1v0112800.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G03750.2 SET domain protein 20; Swiss-Prot: sp|Q9SRV2|SUVR3_ARATH Histone-lysine N-methyltransferase SUVR3; TrEMBL-Plants: tr|I1NGV6|I1NGV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0112800 LjG1.1_chr2 41069099 41076230 -
2 domain predictions
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LotjaGi2g1v0165900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G44150.1 histone-lysine N-methyltransferase ASHH3; Swiss-Prot: sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3; TrEMBL-Plants: tr|A0A0B2NX70|A0A0B2NX70_GLYSO Histone-lysine N-methyltransferase ASHH3; Found in the gene: LotjaGi2g1v0165900 LjG1.1_chr2 57585729 57597709 +
3 domain predictions
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LotjaGi2g1v0165900.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G44150.1 histone-lysine N-methyltransferase ASHH3; Swiss-Prot: sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3; TrEMBL-Plants: tr|A0A0B2NX70|A0A0B2NX70_GLYSO Histone-lysine N-methyltransferase ASHH3; Found in the gene: LotjaGi2g1v0165900 LjG1.1_chr2 57585743 57597610 +
3 domain predictions
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LotjaGi2g1v0222100_LC.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|G7KY38|G7KY38_MEDTR SET-domain protein lysine methyltransferase family protein, putative; Found in the gene: LotjaGi2g1v0222100_LC LjG1.1_chr2 67754274 67762191 +
3 domain predictions
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LotjaGi2g1v0222100_LC.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|G7KY38|G7KY38_MEDTR SET-domain protein lysine methyltransferase family protein, putative; Found in the gene: LotjaGi2g1v0222100_LC LjG1.1_chr2 67754276 67762262 +
3 domain predictions
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LotjaGi2g1v0395800.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G23740.2 histone-lysine N-methyltransferase SUVR5; Swiss-Prot: sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5; TrEMBL-Plants: tr|V7CHV4|V7CHV4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0395800 LjG1.1_chr2 89337976 89349287 -
2 domain predictions
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LotjaGi2g1v0395800.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G23740.2 histone-lysine N-methyltransferase SUVR5; Swiss-Prot: sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5; TrEMBL-Plants: tr|V7CHV4|V7CHV4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0395800 LjG1.1_chr2 89338501 89348436 -
2 domain predictions
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LotjaGi2g1v0419200.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91740680 91751300 -
3 domain predictions
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LotjaGi2g1v0419200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91743422 91751275 -
3 domain predictions
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LotjaGi3g1v0102400.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G04940.1 SU(VAR)3-9 homolog 1; Swiss-Prot: sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|A0A0B2PC71|A0A0B2PC71_GLYSO Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; Found in the gene: LotjaGi3g1v0102400 LjG1.1_chr3 12706709 12711154 -
2 domain predictions
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LotjaGi3g1v0309900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3; TrEMBL-Plants: tr|I1M0I3|I1M0I3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0309900 LjG1.1_chr3 65689534 65697679 -
2 domain predictions
 –