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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0102400 |
| Transcript ID | LotjaGi3g1v0102400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase; TAIR: AT5G04940.1 SU(VAR)3-9 homolog 1; Swiss-Prot: sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|A0A0B2PC71|A0A0B2PC71_GLYSO Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; Found in the gene: LotjaGi3g1v0102400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12706709..12711154) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTGTTAAAATTTTGTTAAGATTTTCTTTCTGTACACTGTTTCACAGGACATAAGCACAGTGAATCTTTATTACAGCA GCACGTGTTCCTGCAGCACGACAACGGAGCATAACATAATAATTAAGCACCTCACAGTCCACTCAGCTAGCACACGGCTC AAAACAAACACAGTGCTTGGTACTTGGTGTAGCCCAAAAACACACACCAATCTTCCTTCTCTTTCACTTTCAAGTTTCAA CTTCATTCATTCAAACCTTTCCTCTTTTGTTCCAATCTTCAGCTACCAAGCACCTACAGTAACTGAAGGTAACACCAACA AATCTCTCTCTCTCTTTTGTTTATTTTAATGTTGTTTTAAGTTTCATGTACTTGTAATGAATGATCTTTCAAGCTTATTT AGAACTTAGCAAATTATAGGGTCCATCTATTATTTTTAGTGAAAATTCATGCTTGATCTCATTTTTTGTAATGGGTTTCT TCTGAAAACCGTTCTTCATGTTCAAGTTTGCATGACCCTTTTGTCCTCTTATGCAGAAAATGACCAAACTTTGCAATTTG GGTTGTCTGAATTTGACTTGAGGGTGGGTTATGTTTGAGTGGGAAAAGAGTGGAAGAATTTGTAACAAAGAGAAGAGAAA GAGGAAATTTTGAGCTAGTGAAGGTTGATTTTCTGTGAGATTTGATTGAAAGGGTTTTGTAATGGAAGAAGAACTAGGTC AAAACAATTCAGTTCCTCCTTCAGGCCCCATTGATAAGTCCAAGATTCTGGATATTAAGCCTCTGAGGAGCTTGATACCT GTTTATCCAATGTCTCCTCAAGCTTCACAGTCAGGCCAGTATCCTCCTGGGTTTTCTTCATTTTTCCCTTTTGGTCCTAC TGCTCATCCAACTACACCCTCTGGGTTCGCAACGACGCCGGGTGGTGCCATGCCAGCTCCAATTCGAGCATTTAGGAGGC CAATAGGAGCAGAAGACATTCCTCCAACAATGGAGGGGTTGAATGATCTTGACACTTCTGGTAAGAAAAAAAAAGCAGTA GGACGCCGGGGTCGCCCCAGATCATCTGAGAAACAGAATAAGAAAGTTAAAGAAGGGCCAGATGTTTATTCTTCAAGTGA TCTAGTTGGTATAACCTCCGAGCAAAGGGGAGATGGTAGCCCTGAAGTGGTTAATCTTGTACTCACGACATTTGATGCGC TTCGAAGACGGCTCTCCCAGCTTGAAGATGCCAAGGAGTTGAGCACTGGTTCAATCAAGCGCCCAGATTTGAAAGCTTGC AAGATTTTGATGACCAGAGGAATCCGAACTAACATGAGGAAGAGAATCGGAACAGCTCCTGGGGTTGAGATTGGGGATAT TTTCTTTTTCCGAATGGAATTATGTCTTGTGGGTTTGCATGCTCCCTCCATGGGTGGAATTGATGCCTTGAATTTGGGCG GGGAGTTTGAGGAAGAAACTGTGGCTACAAGTATTGTTTCGTCAGGAGAATACGACGATGAGGCAGAGGACAGTGATGTT ATAATTTTTACTGGTCAGGGTGGGAACTTCAACAGTAAAGATAAGGAAGTGACAGATCAGAAACTTCAAAGGGGTAATCT TGCTTTGGAAAGAAGTTCACGACAACTAAATGAAGTGAGAGTCATCCGGGGCATGAGAGATGGTGTGAATCCAAATGCGA AAATCTACATTTATGATGGCCTGTATAAAATCCAAGATTCATGGGTAGAAAGGGCGAAAAGCGGTGGCGGTGTATTTAAG TATAAGTTGGTAAGAGTGCCTGGACAAGCTAGTGCGTTTGCTGTTTGGAAATCGGTTCAGAAGTGGAAGTCCGGAGCCCC TTCGAGGAACGGACTTATTCTTGCCGATCTCTCCTCAGGAGCTGAGAAAATTCCTGTATCACTTGTCAATGATGTTGATA GCACGAAGGCGCCTGGCTATTTCACTTATTTCCATTCTCTTAGGCATCCAAAATCGTTCACCTTGATGCAGCCTTCACAT GGGTGCAACTGTACTAAATGTGTCCCTGGTGATTTGAACTGCTCTTGTATTAGGAGAAATGAAGGGGATTTTCCATATAC CAGCAACAGCGTTCTGGTGAGTCGGAAACCATTAGTTCATGAATGTGGCCCGACATGTCAGTGTTTTCCTAACTGCAAAA ATCGAGTATCTCAAACTGGATTAAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGTGGGTGGGGTCTTCGGTCACTG GATCCTATTCGCGCTGGTAGTTTTATTTGCGAGTACGCAGGAGAAGTCTTGGATAGAACCAGGATAAGTCAGCTTATGAA GGAAGGAGATAGTGATGAGTATGTTTTTGATACGACCCGTGTTTATGATTCATTCAAGTGGAATTATGAACCGAGGTTAC TGGACGAAGTGAGCACAAATGACTCTAACGAAGATTATGCTATACCATATCCTCTAATTATAAGTGCCAAGAATGTCGGG AACGTAGCTCGATTCATGAATCATAGTTGCTCTCCAAATGTGTTCTGGCAGCCTGTCATGTATGAAGAAAATAACCAATC CTTCCTCCATATTGCCTTTTTTGCACGCAGACACATCCCCCCAATGATGGAGTTAACATATGATTATGGATCTGCCCGGT CTGATCATGCTGAGGGTAGCAATGCACACAAGGGGAGAAAGAAGTGCTTATGTGGATCATCGAACTGCCGCGGTTCTTTT GGTTAACATTTTGTTCCAGTTTCTCACAGGCCGTCAAGGTAACAAATGCATTCATGGCTAATAAGGTTTCAAGTTCTTGT TCATGTTTCAAAACTCTGCTATTTAGAGGAATGAAATTTAGTAATGTATGAATTCATGGATCATGTTTTATTGTCAATCT TTATTCCTCCCATTTTGTGGAAGGATTGCATAAATTCTCATTTCAACAGCTCATCAAACTCATGAGAAGCAAAACAAAAA AAAAATGCTACTGTTCCCTTTCACACTATTTTCAATTCAACTTTTATAACACTGCTCTTTGGATGTTGGCATGTTAGCCT TTGTTGATCAACTTCAAATCAACTAGGCATCTAAATTTTGTATTGCCCTGATTCCACTTCACATGCCATTGGGTTCATTA TGATGGTATTTATACACAATAAATGTTGGTTAATAGTATTACCAATTCATTGCATTTTACTTTGTTCACATGTGCATGTG TGTTTATGTGTTTAACGAAGTTTCTTATTTGTCTTTATCTATAAAAGTTAATTTTGGTTTAAGAACTTATGAAAAGTCTT GGACTTGCATGACTCATAAGCATGGGGGAAAATTTAACAATTCTGATCAAGGTTATAAATTATGGTAACGGTCCTGGTCG AGTCACGGTTGTGTTGCGATCCTTCATATTGCGGAAGATTGTGACTAAACGTGGCTGTTGCTGCCGAAATCAGGGCCACG CTGTAGTTTTGAAAACCTCCAAAACCTTTGTCGCGGCCGATGTGGACCCTGATTTAAAACCATGATTCTGATTGTTATCT TAGAACTTGCATATTTGTTGGCAAAATGATAATGCTTTCATAGTCATTTCCAATCTCAGAAGTGGATGCTTTCATAGTCA TTTCCAATGAAGCTAATAGTCATTTCCATCTATCTTGTTTTGATTTAACAGCTAGATGAGGTGAATGATGATGGCGTTCC ATATGTAGGGTCAGATCCAATCTCAGAAGTTTTTTGTGGATGTAATTGTAAGCGCTACCAAATAACCTTGTCAAGGGTTG GTGTGTTTGACTATAAATAAATCATCTGTCTCTCTCTGGACCTGACCTTTTTTCTTGCTCCAACTTTATCATAAACTACC ACTGATGTTGTATAATATGTGTGAAATTTGTGATGGTAATGGCCATGGTACACTCATTTTGCTACTTATATGGATCCACT TTTCCTTTTGACATGGACTCGCTGTATTTGATGTTTCAAAAAAGGCTCAGAATTGGGATTGTAGAAGCCAATTGGTGAAA CCTATGGATTACATTCTATGCTTATTGCATTTTAACATGACATTGTCATGGGATCCTTTTCTTGGGTCCTTTGGCTTCTG CTGCAGCCGTCGTGACTCGAGTTCTTTGAGTGAACTCGGTCCCATTTGTTTGTTAGTTAGTACTTACTAGTTGCAGTGAT TAGCAGCTGAAGGGATTTAGGATCTCCATTAGACAAGCTACTCTGATTGGCTTTTAGATTTTCATTTTATATGCAATTCT GGGATGTCTCGCCTAAACAAACATGTCATTAGTGTTTGTCAAACCGTGTGTAAGATAATGCAATTGAACCAAATTTTCAC GTTTTTAGCACTTGAACATGTAATTCTTCATTTTGAGTCGGCAAGCAATGGAGAAGGTAACAGAAATCCAGATATAGATT TCTCATAATCTTCAGCTGATGGTAAGTGTCTAAAACTAAGTTCAAC
CDS sequence (LotjaGi3g1v0102400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAACTAGGTCAAAACAATTCAGTTCCTCCTTCAGGCCCCATTGATAAGTCCAAGATTCTGGATATTAAGCC TCTGAGGAGCTTGATACCTGTTTATCCAATGTCTCCTCAAGCTTCACAGTCAGGCCAGTATCCTCCTGGGTTTTCTTCAT TTTTCCCTTTTGGTCCTACTGCTCATCCAACTACACCCTCTGGGTTCGCAACGACGCCGGGTGGTGCCATGCCAGCTCCA ATTCGAGCATTTAGGAGGCCAATAGGAGCAGAAGACATTCCTCCAACAATGGAGGGGTTGAATGATCTTGACACTTCTGG TAAGAAAAAAAAAGCAGTAGGACGCCGGGGTCGCCCCAGATCATCTGAGAAACAGAATAAGAAAGTTAAAGAAGGGCCAG ATGTTTATTCTTCAAGTGATCTAGTTGGTATAACCTCCGAGCAAAGGGGAGATGGTAGCCCTGAAGTGGTTAATCTTGTA CTCACGACATTTGATGCGCTTCGAAGACGGCTCTCCCAGCTTGAAGATGCCAAGGAGTTGAGCACTGGTTCAATCAAGCG CCCAGATTTGAAAGCTTGCAAGATTTTGATGACCAGAGGAATCCGAACTAACATGAGGAAGAGAATCGGAACAGCTCCTG GGGTTGAGATTGGGGATATTTTCTTTTTCCGAATGGAATTATGTCTTGTGGGTTTGCATGCTCCCTCCATGGGTGGAATT GATGCCTTGAATTTGGGCGGGGAGTTTGAGGAAGAAACTGTGGCTACAAGTATTGTTTCGTCAGGAGAATACGACGATGA GGCAGAGGACAGTGATGTTATAATTTTTACTGGTCAGGGTGGGAACTTCAACAGTAAAGATAAGGAAGTGACAGATCAGA AACTTCAAAGGGGTAATCTTGCTTTGGAAAGAAGTTCACGACAACTAAATGAAGTGAGAGTCATCCGGGGCATGAGAGAT GGTGTGAATCCAAATGCGAAAATCTACATTTATGATGGCCTGTATAAAATCCAAGATTCATGGGTAGAAAGGGCGAAAAG CGGTGGCGGTGTATTTAAGTATAAGTTGGTAAGAGTGCCTGGACAAGCTAGTGCGTTTGCTGTTTGGAAATCGGTTCAGA AGTGGAAGTCCGGAGCCCCTTCGAGGAACGGACTTATTCTTGCCGATCTCTCCTCAGGAGCTGAGAAAATTCCTGTATCA CTTGTCAATGATGTTGATAGCACGAAGGCGCCTGGCTATTTCACTTATTTCCATTCTCTTAGGCATCCAAAATCGTTCAC CTTGATGCAGCCTTCACATGGGTGCAACTGTACTAAATGTGTCCCTGGTGATTTGAACTGCTCTTGTATTAGGAGAAATG AAGGGGATTTTCCATATACCAGCAACAGCGTTCTGGTGAGTCGGAAACCATTAGTTCATGAATGTGGCCCGACATGTCAG TGTTTTCCTAACTGCAAAAATCGAGTATCTCAAACTGGATTAAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGTGG GTGGGGTCTTCGGTCACTGGATCCTATTCGCGCTGGTAGTTTTATTTGCGAGTACGCAGGAGAAGTCTTGGATAGAACCA GGATAAGTCAGCTTATGAAGGAAGGAGATAGTGATGAGTATGTTTTTGATACGACCCGTGTTTATGATTCATTCAAGTGG AATTATGAACCGAGGTTACTGGACGAAGTGAGCACAAATGACTCTAACGAAGATTATGCTATACCATATCCTCTAATTAT AAGTGCCAAGAATGTCGGGAACGTAGCTCGATTCATGAATCATAGTTGCTCTCCAAATGTGTTCTGGCAGCCTGTCATGT ATGAAGAAAATAACCAATCCTTCCTCCATATTGCCTTTTTTGCACGCAGACACATCCCCCCAATGATGGAGTTAACATAT GATTATGGATCTGCCCGGTCTGATCATGCTGAGGGTAGCAATGCACACAAGGGGAGAAAGAAGTGCTTATGTGGATCATC GAACTGCCGCGGTTCTTTTGGTTAA
Protein sequence (LotjaGi3g1v0102400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEELGQNNSVPPSGPIDKSKILDIKPLRSLIPVYPMSPQASQSGQYPPGFSSFFPFGPTAHPTTPSGFATTPGGAMPAP IRAFRRPIGAEDIPPTMEGLNDLDTSGKKKKAVGRRGRPRSSEKQNKKVKEGPDVYSSSDLVGITSEQRGDGSPEVVNLV LTTFDALRRRLSQLEDAKELSTGSIKRPDLKACKILMTRGIRTNMRKRIGTAPGVEIGDIFFFRMELCLVGLHAPSMGGI DALNLGGEFEEETVATSIVSSGEYDDEAEDSDVIIFTGQGGNFNSKDKEVTDQKLQRGNLALERSSRQLNEVRVIRGMRD GVNPNAKIYIYDGLYKIQDSWVERAKSGGGVFKYKLVRVPGQASAFAVWKSVQKWKSGAPSRNGLILADLSSGAEKIPVS LVNDVDSTKAPGYFTYFHSLRHPKSFTLMQPSHGCNCTKCVPGDLNCSCIRRNEGDFPYTSNSVLVSRKPLVHECGPTCQ CFPNCKNRVSQTGLKHHMEVFKTKDSGWGLRSLDPIRAGSFICEYAGEVLDRTRISQLMKEGDSDEYVFDTTRVYDSFKW NYEPRLLDEVSTNDSNEDYAIPYPLIISAKNVGNVARFMNHSCSPNVFWQPVMYEENNQSFLHIAFFARRHIPPMMELTY DYGSARSDHAEGSNAHKGRKKCLCGSSNCRGSFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 21 | 673 | 653 | 0.0 | – | |
| PANTHER | 21 | 673 | 653 | 0.0 | – | |
| ProSiteProfiles | 55 | 674 | 620 | 186.298 | ||
| MobiDBLite | 91 | 152 | 62 | - | – | |
| MobiDBLite | 118 | 134 | 17 | - | – | |
| Gene3D | 145 | 364 | 220 | 6.7E-62 | ||
| SUPERFAMILY | 192 | 379 | 188 | 2.14E-56 | ||
| SMART | 205 | 362 | 158 | 8.0E-79 | ||
| Pfam | 209 | 362 | 154 | 2.9E-45 | ||
| ProSiteProfiles | 210 | 358 | 149 | 52.018 | ||
| Gene3D | 365 | 652 | 288 | 3.6E-81 | – | |
| SMART | 387 | 480 | 94 | 1.9E-24 | ||
| Pfam | 391 | 488 | 98 | 5.4E-19 | ||
| SUPERFAMILY | 397 | 671 | 275 | 1.1E-70 | – | |
| ProSiteProfiles | 433 | 493 | 61 | 10.836 | ||
| SMART | 496 | 649 | 154 | 6.8E-39 | ||
| ProSiteProfiles | 496 | 643 | 148 | 18.201 | ||
| Pfam | 507 | 643 | 137 | 2.1E-21 | ||
| ProSiteProfiles | 658 | 674 | 17 | 9.511 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Histone methylation | The modification of histones by addition of methyl groups. | ||
| Molecular function | Histone-lysine N-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives. | ||
| Biological process | Histone lysine methylation | The modification of a histone by addition of one or more methyl groups to a lysine residue. |
Expression pattern of LotjaGi3g1v0102400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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