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Lj1g3v2095720.1

Overview

Field	Value
Gene ID	Lj1g3v2095720
Transcript ID	Lj1g3v2095720.1
Lotus japonicus genome version	MG20 v3.0
Description	Replication factor A protein [Medicago truncatula] gi\|357516559\|ref\|XP_003628568.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	193	193	–	–
PANTHER	PTHR23273 View details on PTHR23273 Search for proteins/transripts with this domain View external data on PTHR23273	13	218	206	1.80E-37	–
SUPERFAMILY	SSF50249 View details on SSF50249 Search for proteins/transripts with this domain View external data on SSF50249	13	117	105	5.57E-17	IPR012340 Show description in modal box View details on IPR012340 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.40.50.140 View details on G3DSA:2.40.50.140 Search for proteins/transripts with this domain View external data on G3DSA:2.40.50.140	15	116	102	1.30E-15	–
CDD	cd04480 View details on cd04480 Search for proteins/transripts with this domain View external data on cd04480	27	115	89	2.17E-22	–
Pfam	PF02721 View details on PF02721 Search for proteins/transripts with this domain View external data on PF02721	52	116	65	9.00E-14	IPR003871 Show description in modal box View details on IPR003871 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.40.50.140 View details on G3DSA:2.40.50.140 Search for proteins/transripts with this domain View external data on G3DSA:2.40.50.140	131	216	86	7.70E-08	–
SUPERFAMILY	SSF50249 View details on SSF50249 Search for proteins/transripts with this domain View external data on SSF50249	132	216	85	5.57E-08	IPR012340 Show description in modal box View details on IPR012340 Search for proteins/transripts with this domain View on EBI InterPro Service
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	192	214	23	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	194	214	21	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	215	218	4	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v2095720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2095720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.