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Lj1g3v3385890.1

Overview

Field Value
Gene ID Lj1g3v3385890
Transcript ID Lj1g3v3385890.1
Lotus japonicus genome version MG20 v3.0
Description Replication factor A protein [Medicago truncatula] gi|357491997|ref|XP_003616287.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 17 17 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 4 4 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
5 13 9 – –
Pfam
PF02721
14 74 61 9.80E-11
IPR003871
CDD
cd04480
14 71 58 2.12E-14 –
PANTHER
PTHR23273
14 364 351 1.50E-54 –
Phobius
SIGNAL_PEPTIDE_C_REGION
14 17 4 – –
Gene3D
G3DSA:2.40.50.140
15 72 58 8.30E-05 –
SUPERFAMILY
SSF50249
15 73 59 1.43E-05
IPR012340
Phobius
NON_CYTOPLASMIC_DOMAIN
18 485 468 – –
Gene3D
G3DSA:2.40.50.140
84 206 123 4.20E-16 –
SUPERFAMILY
SSF50249
88 211 124 1.17E-15
IPR012340
CDD
cd04481
104 203 100 6.71E-12 –
SUPERFAMILY
SSF50249
237 394 158 2.57E-19
IPR012340
CDD
cd04476
246 383 138 2.49E-25 –
Pfam
PF08646
256 396 141 1.00E-13
IPR013955
Gene3D
G3DSA:2.40.50.140
267 396 130 9.40E-13 –
MobiDBLite
mobidb-lite
410 429 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v3385890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3385890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.