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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0206300 |
| Transcript ID | LotjaGi1g1v0206300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|C6T5K3|C6T5K3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44889993..44893366) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGCCCATGGATATCGTTGCCAAAGCCAAGGAAGACGCTTCGCTCCCTAAAGGTACCAACCAACCCTTTTTTATTTT TTTTTCGAGAAATTGTTGAAAAAATTAAAAATAATTTTCTCGATTTCTATCTTTACAGCAACAATGACGAAAATTATTAA GGAGATGCTGCCCCCGGATGTTCGTGTCGCCAGAGATGCCCAGGATTTATTGATCGAGTGTTGTGTAGGTTAGGGATTTC GAACGAACGTTTCTTCATTGATTTTGTTGCTAATTTGATTAATATCAAATGAATTTCATTTAACAATCAAGAGTATTTTG AGAAAGTGTGTAAAAGAATGGGTGACTTCTTACTTGTATGCGCTAATGATCTCGATGAGACTCAAAAATACCAACATTTG TGGATTGAATGCGTAAATTGTTATGGATTAAATTATAAGAAACGAGAACTTTGTTTTGTTGGATTCACTTAGGGTGGCTC TTTCCTGCTTTATTTATTATATTCATAGTTTACACTTCTACTGAATAAGGTTTTATTGGGTGGCCTGTGTCATTGTAGAG TTTATAAACCTCGTCTCGTCAGAATCCAATGAAGTCTGTGGCAGAGAGGAGAGAAGGACAATTGCGCCTGAGCACGTATT GAAGGCTTTAGGGGTATTTCCTCAAATATTTAAACTGTTGTTTGTCCAAAGTTTTCATGTGACTTATCTCCAATTTAGAT TTAATTCGTTATGTGGTCTCTCCATGGATGTCCTGCATTTCAATTTGTATCTCGAATCTTGAATTCTGTCTTAACTCTTA CGAGTGTTTCTTGCGTTAACATGTATCCTTCTAATTTTGAAGTGCCTGTTATTCTTATTTTTCTTTGTGTTGTAGTTTGA TCATGGCAGGCTGTAACATAGTATCAGTTTATATTAGTGTAATTCACTTCCTTGATCATATACGGTGCCTCAGTGTTTAA ATTCACATGCTATTTAATTGATTTTCGTCATATTTAGAGCTTTAAATAGTTGGTGAACATTTTAACTGTTGGAGGCTGCA CACGATTATACAATTTATAGATTTTGTATAGATTTACATTGTATGTAGCATCATTCAGTGGTATCTTGATGAACTGCGGT AAGTTTGGCTGAGAAAAACACCATTAGATTAAGGTTCTTATGTTGAACTTTAAAAGGATTTGGATTAATTATTATTAGGT GTAATTAACAATTCCATCTTCCTGATTCTTCTAGAAACTGATGTGCAAAGTGGTAATTTTGCTTGATAGTCAAAAATTAA ACCACAATGAATTCATTTTATTCATATCTTCACTAAAACTTGAGTACTGCTTTCCGGATCGTGAAATAATTTTTAGTATT ACCACATTTGGCTGTCCTTTGCTACTTACTGCTTTGTCCGTCTTAAATGCCTCTACTTCCCACTTACAAGAATTGAAATA TGTCAACTCATAATAGATAGTTCCTCATCCTGAAGCCAAAGTTGTTGATGGTCTTCTGTTATAACTTATAACAAACCATG TTTTCATACAAATGTTTGATAATTGTTAATACCAATTTGTATCTTTGTTACTGTCGAAATGTAGGTTTTATTTTGTTTTT ATTGCATTTAAGATTTTGTTTGGAAATTTTTTATGAAAAAGTTTGTTTTTTTAAATGATTTATTTTCAGTTCCAAGTTGA AGTCTTTTATACACAGGATAATTTTATTTCCTAATGTGATAAGCACTCATAAATGTCATATTGTCAAGATGGTCATATTG TATGTTTTTACTTTTTAAGCATGCTGTAAAACAGTTGTTAATTTGTACATGTTTTTAACAGGTTCTTGGATTTGGTGATT ACATTGAGGAAGTCTATGCAGCATATGAACAGCACAAGTTGGAGACAATGGTAATTGTTTAATGTTGACAGCTTATTTGC ATGTTGAATTGCTAAAGTGATATTCCCTCTGTCCCTAATTATAAGACCCTTTAGAGACATGCTTAGTGTCCCTTTATATA AGACCCCTACTAGATTTTAGAAATATTTATTATCATTTCCCATGTATGCTCCTTGTATTTATTATACTTTTGTAATTCTT AAATTTTGATTACCACTAATAATCAATGCTTTTCCACACTACTCAATACATTAATTCAGGGTAAATGTCGAAGATTGTTT AAACTTTTTTAAAACCAAGACATTAATTAACATCATTACATGTTTGCTTAATTAGCGTAATTGTCTTTTAAGAGAACCTT ATAATTAGGGACGTAGGGAGTATAATATAAATTTGATGTTTTATAGTCATATGCAGATTGTTAATAACCATGAAAAATTT ATGAGTGGCCTCCGTGAACCATTTATATGCTTTTCTGATCATCTTTGAACCATGCTAGTTGGAAGCTGATTATCTGTTTT CCAAATTGGTATCTTAAGGGAGCACCTGCAGACCTTATTGATGGCCCTCTAAAGAAACCCCAAGTGTTCCCTTCTAACCC TTCTGGTTGGCTGCCTGGGAGAGTGATCCATGAAATGTTTATCTTTGTATTTTATTGTTATATACATTGGAAAGATGTTA ATGGGCTGATAACTTCACTTTGCTTCTCTTCCCTTGTCAACGCCTTTTGTTGTGTAGTTTTTGCGAACCTTGCATGTGCT GTTGCACTATCACAGTCCAATTTCCTTTATAATTGGTAGAGGGGCCTATTAAGACAGTTTTATGTGGGCAAACTTGCTGG AAAGAACCTAATGGGCTGATAACTTATGCTCATTTCATCTTATCTGCATTGTGTTTAAGTTTACTTTTAAAAGCACAACG TACACTTTTTTCTGCCGGTGAAATCTAAGTCTTCTAAGATTTGTGATTCTCCGGTAGCCTGTTTGATCATTCTATGCTTG TGGGGCTGTAAGATATTTTAGTAGGCTTTGAAGTACACAAGTGGCTGTTCGTTGTAGTTGACTGGAGATGGATTTCGTCG CCCGTCGGGCAAAGTGATCGCATCTGGCTTGAGTTGATGGTCTAGAATCTAGATCTTGTTTTTTGTTTTTGGGTATAGCC ATATAGGGTCTGGACTCTGGATTTCATTGTGGCCATTGCGAGCCATGAAGACCCGGATGCAGGAGGCTGCATGTATTGTT AATCACTAACTGGAAAAGTGAATTTTGAATCTGAAAATTACTTTGGCAAAGAAAAAAACTGTTTTTTTCTGATATATCTT GTTACCTTTCAGCAGGACACTCTTAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCGTTAGCTGA GCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGGATGAATGGAGGGACCATTACTTCCAAGGAGCCAGATGCTGACCAAA GTTAAGAGAGCTAA
CDS sequence (LotjaGi1g1v0206300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCCATGGATATCGTTGCCAAAGCCAAGGAAGACGCTTCGCTCCCTAAAGCAACAATGACGAAAATTATTAAGGA GATGCTGCCCCCGGATGTTCGTGTCGCCAGAGATGCCCAGGATTTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCG TCTCGTCAGAATCCAATGAAGTCTGTGGCAGAGAGGAGAGAAGGACAATTGCGCCTGAGCACGTATTGAAGGCTTTAGGG CAGGACACTCTTAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCGTTAGCTGAGCAGCAAAGGAT GTTTGCAGAAGCACGTGCTAGGATGAATGGAGGGACCATTACTTCCAAGGAGCCAGATGCTGACCAAAGTTAA
Protein sequence (LotjaGi1g1v0206300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPMDIVAKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREERRTIAPEHVLKALG QDTLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGTITSKEPDADQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 80 | 80 | 1.9E-80 | – | |
| PANTHER | 1 | 80 | 80 | 1.9E-80 | – | |
| SUPERFAMILY | 12 | 119 | 108 | 7.04E-28 | ||
| Gene3D | 13 | 124 | 112 | 7.5E-29 | ||
| Pfam | 14 | 79 | 66 | 8.7E-22 | ||
| PANTHER | 82 | 130 | 49 | 1.9E-80 | – | |
| PANTHER | 82 | 130 | 49 | 1.9E-80 | – | |
| Coils | 92 | 112 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi1g1v0206300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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