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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0206300 |
| Transcript ID | LotjaGi1g1v0206300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44887445..44893732) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAATACGCGCACGATTAGCGCGTGGTTCGACGCGGTTTTGGTTCGCTCACCCTAACCTAAGCAAAGGTTCATGACGG AAGCAAAGAACTTTGATTGTCGTCCTTATCCATCCAGTTGAACAGCACCATCATCATCATCCATCACCATGTCCTTGTTT TCATAAATGCATCCATCATCAACCATGTTCTTCATCTTCATCTTCCCTCAACTTCGATCTTCAAATTCAATCACTTCACT TCTCAATCGGTGACTTCTCTCTCTCTCTTTTTCTTCTTCAGATCTGATCTTCCTTCCCTTCTTCGTCTTCTTAACCCTAA TTATTCGATTTTCAGCTCAAATTAACAACACACAAGAAGAACAACCATGGAGCCCATGGATATCGTTGCCAAAGCCAAGG AAGACGCTTCGCTCCCTAAAGGTACCAACCAACCCTTTTTTATTTTTTTTTCGAGAAATTGTTGAAAAAATTAAAAATAA TTTTCTCGATTTCTATCTTTACAGCAACAATGACGAAAATTATTAAGGAGATGCTGCCCCCGGATGTTCGTGTCGCCAGA GATGCCCAGGATTTATTGATCGAGTGTTGTGTAGGTTAGGGATTTCGAACGAACGTTTCTTCATTGATTTTGTTGCTAAT TTGATTAATATCAAATGAATTTCATTTAACAATCAAGAGTATTTTGAGAAAGTGTGTAAAAGAATGGGTGACTTCTTACT TGTATGCGCTAATGATCTCGATGAGACTCAAAAATACCAACATTTGTGGATTGAATGCGTAAATTGTTATGGATTAAATT ATAAGAAACGAGAACTTTGTTTTGTTGGATTCACTTAGGGTGGCTCTTTCCTGCTTTATTTATTATATTCATAGTTTACA CTTCTACTGAATAAGGTTTTATTGGGTGGCCTGTGTCATTGTAGAGTTTATAAACCTCGTCTCGTCAGAATCCAATGAAG TCTGTGGCAGAGAGGAGAGAAGGACAATTGCGCCTGAGCACGTATTGAAGGCTTTAGGGGTATTTCCTCAAATATTTAAA CTGTTGTTTGTCCAAAGTTTTCATGTGACTTATCTCCAATTTAGATTTAATTCGTTATGTGGTCTCTCCATGGATGTCCT GCATTTCAATTTGTATCTCGAATCTTGAATTCTGTCTTAACTCTTACGAGTGTTTCTTGCGTTAACATGTATCCTTCTAA TTTTGAAGTGCCTGTTATTCTTATTTTTCTTTGTGTTGTAGTTTGATCATGGCAGGCTGTAACATAGTATCAGTTTATAT TAGTGTAATTCACTTCCTTGATCATATACGGTGCCTCAGTGTTTAAATTCACATGCTATTTAATTGATTTTCGTCATATT TAGAGCTTTAAATAGTTGGTGAACATTTTAACTGTTGGAGGCTGCACACGATTATACAATTTATAGATTTTGTATAGATT TACATTGTATGTAGCATCATTCAGTGGTATCTTGATGAACTGCGGTAAGTTTGGCTGAGAAAAACACCATTAGATTAAGG TTCTTATGTTGAACTTTAAAAGGATTTGGATTAATTATTATTAGGTGTAATTAACAATTCCATCTTCCTGATTCTTCTAG AAACTGATGTGCAAAGTGGTAATTTTGCTTGATAGTCAAAAATTAAACCACAATGAATTCATTTTATTCATATCTTCACT AAAACTTGAGTACTGCTTTCCGGATCGTGAAATAATTTTTAGTATTACCACATTTGGCTGTCCTTTGCTACTTACTGCTT TGTCCGTCTTAAATGCCTCTACTTCCCACTTACAAGAATTGAAATATGTCAACTCATAATAGATAGTTCCTCATCCTGAA GCCAAAGTTGTTGATGGTCTTCTGTTATAACTTATAACAAACCATGTTTTCATACAAATGTTTGATAATTGTTAATACCA ATTTGTATCTTTGTTACTGTCGAAATGTAGGTTTTATTTTGTTTTTATTGCATTTAAGATTTTGTTTGGAAATTTTTTAT GAAAAAGTTTGTTTTTTTAAATGATTTATTTTCAGTTCCAAGTTGAAGTCTTTTATACACAGGATAATTTTATTTCCTAA TGTGATAAGCACTCATAAATGTCATATTGTCAAGATGGTCATATTGTATGTTTTTACTTTTTAAGCATGCTGTAAAACAG TTGTTAATTTGTACATGTTTTTAACAGGTTCTTGGATTTGGTGATTACATTGAGGAAGTCTATGCAGCATATGAACAGCA CAAGTTGGAGACAATGGTAATTGTTTAATGTTGACAGCTTATTTGCATGTTGAATTGCTAAAGTGATATTCCCTCTGTCC CTAATTATAAGACCCTTTAGAGACATGCTTAGTGTCCCTTTATATAAGACCCCTACTAGATTTTAGAAATATTTATTATC ATTTCCCATGTATGCTCCTTGTATTTATTATACTTTTGTAATTCTTAAATTTTGATTACCACTAATAATCAATGCTTTTC CACACTACTCAATACATTAATTCAGGGTAAATGTCGAAGATTGTTTAAACTTTTTTAAAACCAAGACATTAATTAACATC ATTACATGTTTGCTTAATTAGCGTAATTGTCTTTTAAGAGAACCTTATAATTAGGGACGTAGGGAGTATAATATAAATTT GATGTTTTATAGTCATATGCAGATTGTTAATAACCATGAAAAATTTATGAGTGGCCTCCGTGAACCATTTATATGCTTTT CTGATCATCTTTGAACCATGCTAGTTGGAAGCTGATTATCTGTTTTCCAAATTGGTATCTTAAGGGAGCACCTGCAGACC TTATTGATGGCCCTCTAAAGAAACCCCAAGTGTTCCCTTCTAACCCTTCTGGTTGGCTGCCTGGGAGAGTGATCCATGAA ATGTTTATCTTTGTATTTTATTGTTATATACATTGGAAAGATGTTAATGGGCTGATAACTTCACTTTGCTTCTCTTCCCT TGTCAACGCCTTTTGTTGTGTAGTTTTTGCGAACCTTGCATGTGCTGTTGCACTATCACAGTCCAATTTCCTTTATAATT GGTAGAGGGGCCTATTAAGACAGTTTTATGTGGGCAAACTTGCTGGAAAGAACCTAATGGGCTGATAACTTATGCTCATT TCATCTTATCTGCATTGTGTTTAAGTTTACTTTTAAAAGCACAACGTACACTTTTTTCTGCCGGTGAAATCTAAGTCTTC TAAGATTTGTGATTCTCCGGTAGCCTGTTTGATCATTCTATGCTTGTGGGGCTGTAAGATATTTTAGTAGGCTTTGAAGT ACACAAGTGGCTGTTCGTTGTAGTTGACTGGAGATGGATTTCGTCGCCCGTCGGGCAAAGTGATCGCATCTGGCTTGAGT TGATGGTCTAGAATCTAGATCTTGTTTTTTGTTTTTGGGTATAGCCATATAGGGTCTGGACTCTGGATTTCATTGTGGCC ATTGCGAGCCATGAAGACCCGGATGCAGGAGGCTGCATGTATTGTTAATCACTAACTGGAAAAGTGAATTTTGAATCTGA AAATTACTTTGGCAAAGAAAAAAACTGTTTTTTTCTGATATATCTTGTTACCTTTCAGCAGGACACTCTTAAAGGTGCCA AGTGGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCGTTAGCTGAGCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGG ATGAATGGAGGGACCATTACTTCCAAGGAGCCAGATGCTGACCAAAGTTAAGAGAGCTAACCTTTTAGGATCTTTATTTT CTTGAGCATAGGCAAGCATCTCTGACTCTTCTCTGCGTTAATTTAGTTCGATTTGCATAAAACCCATTCACTAGTTTGCT AGCCTATGTGGATGTGCTGGCCATTGTGTTCTTTTAGTGATCCATATTTGTAAGTTAATGTAATTAAAAGAGTTCATTTA AATCGTGGTCTATTTAGAATTACCTGTAAATTATTTCATTTACCTGTTGTGTCTCCTACGCTTAAAAGCCTTATAGCTTT AAAAAAAACTCAAACTTGGCTTAATTATATCTCATTCATGTAGTTTTATTTGAATGAATTTGTAGTACGAATCTGTGGTC TCTTATATAACTAATTTATGAAATTTGGAATCAACATGCTTTGGCTAATTCTCTTCCAATGATAAATTTAGGAAGTGATT GAAACAGTTTATACATTTGACCAACTCATCCCTGCCTAGCCGTAACACACTTCTGGAAATTCTTTCTGTAGGTGATGTAC TGATTTCCGTTTCAAATGCTAGTGTCGTCTCCTTCCTTGCTACCTATCAAATTGTTTGGATATGTTTTAGCCAATTCAGA ATCGACTTCAATTTTTGGGTGTTTGGTAGTTTCTTTTAAAATTTTATTCTAATTCCATAATCAATTCTTATATGAAGTCC CTTTTCACAACATATCTTGTTAGGTGGATATATTAAATTGAGAGATTTCACAACATTACCTTAATAAAGTCCCTTTTCTT GTAAACTGGTCCAAACATAAGTTACGTTACTTTCAACTCACGTTTATCATAATCAATTTTTACCTAAATAATTTATCTAC AATAAATCTTGACAAAGGTAATCCAAATAGGCGCTAAGGAGTAGCTTCTCATTTTTAGTGTGTTTGTATTGGTGGTGGTA CACTATCCAAAACAAGTTTACAAGCTAAACTTTATTGCTTCTCTTGATTATTTGGCTTTCTATCACCTTGTTTTGTATTA TAAGGTGGCCCGACCAAACTCGAGCGATCGGTACATGCGGTGGGTACATTTCCAGGTTTCATCATACCTAGCGATGTAGA CATGGCGCTGCTCGATGCTTCCATTTGCTCGCTTGCCTTGGCATTGCGGGGTGTGGAACGTTTAGTGGTGTTGGGTCTAC TGTACGTGAGGGTGTATGAGTTGTGTTTGGGTTGTTTTTGCTGGCTGGCTCCATGCTTTTGCATCGAACGGTTGGCATGC AATCTTGTTTCAAGTGAACGTCCCTTTTAGTTGCGTGATTGCGGTTCCTGTGTTGACTACCTCTTGAATGGTATTCGTGT GGCTTGTCGGATTTCGTCCATCCAGACCTCCTCGAGGGGGTTCTGGGGGATCTCGAGGTGATGCATGTGTTCCACGTTTG CGATTCATTCTTGAAGCAATTGTGGCGCATATGTTTTTGTTGCTCTCTCGGATGTGGTGCATGAGATGAAACATGGGAAA TTCTTCCATGCAGTCCCTTTAATCTTAATTACCTAAATAATTTATCTACAATAAATCTTGACAAAGGTAATCCAAATAGG CGCTAAGGAGTAGCTTCTCATTTTTAGTGTGTTTGTATTGGTGGTGGTACACTATCCAAAACAAGTTTACAAGCTAAACT TTATTGCTTCTCTTGATTATTTGGCTTTCTATCACCTTGTTTTGTATTATAAGGTGGCCCGACCAAACTCGATTTCACTG CGGTACAAGGAAAATTGCAATCATTTTTATTTGAGTTTGAATGCTCTCGTTATAGGATCATATTATTGAAGAGAAATAGA AACAACTTTCTTGTACAGTAACTCAATTGTGAGGTTCAATTATTGTAACATCCCGATCTGACGACTGGTTTTACAGTAAC AATATGAGTCTTTTCAGTGTGCTTTGTCCTCACTCACGCATTTTTCGGAAAAACTTGCATGAAGTCACCCATCATAATAT TGCTCCAAGGCAAGCACACTTAACCTTGGAGTTTTTATAAGTTGGGCTTACGAAAAGAAGATGCATCTTGTTGTTATGAG TAGTACCAATTAAATCTTTTATGCCCTCCTCAACTGTATAGTCTCATACTTATACAGTCTCGGAATACCTCTTATTTTGG TGTGAGATCGATTCATTCATGTGCCCCTTCGCTTAGAAGTCTGCCAGGAGTTGTTTCTTGTCCGTGCCTCACTGCACCGA CGATCACTCCCCGCACTCGTCGGTCCCGGGTGTTACATGCCCACCAGCTTCCGCTTGGTTCGTCCTCGAACCGCATCGTA CTGAGAGAGATTGACTCTGATACCATTTGTAACATCCCGATATGACGATTGGCCTTATGGTAACAACACGATTCTTTTCA GTGCGCTTTGTCCTCACTCACGCACTTCCTAGAAAAACTTCACAGGAGGTCATCCATCATAATATGGCTTCAAGGCAAGC ACACTTAACCTTAAGAGTTTTTATGAGTTGGGCTCCCGAAAAGAAGATGCATCTTGTTGTTATGAGTAGTACTAATCAAA TCTTTTATGCCCTCCTCAACTGTATAGTCTCATACCTATACAGTCTCA
CDS sequence (LotjaGi1g1v0206300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCCATGGATATCGTTGCCAAAGCCAAGGAAGACGCTTCGCTCCCTAAAGCAACAATGACGAAAATTATTAAGGA GATGCTGCCCCCGGATGTTCGTGTCGCCAGAGATGCCCAGGATTTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCG TCTCGTCAGAATCCAATGAAGTCTGTGGCAGAGAGGAGAGAAGGACAATTGCGCCTGAGCACGTATTGAAGGCTTTAGGG GTTCTTGGATTTGGTGATTACATTGAGGAAGTCTATGCAGCATATGAACAGCACAAGTTGGAGACAATGCAGGACACTCT TAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCGTTAGCTGAGCAGCAAAGGATGTTTGCAGAAG CACGTGCTAGGATGAATGGAGGGACCATTACTTCCAAGGAGCCAGATGCTGACCAAAGTTAA
Protein sequence (LotjaGi1g1v0206300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPMDIVAKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREERRTIAPEHVLKALG VLGFGDYIEEVYAAYEQHKLETMQDTLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGTITSKEPDADQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 153 | 153 | 1.9E-107 | – | |
| PANTHER | 1 | 153 | 153 | 1.9E-107 | – | |
| Gene3D | 5 | 141 | 137 | 1.3E-41 | ||
| SUPERFAMILY | 12 | 142 | 131 | 2.18E-35 | ||
| Pfam | 14 | 79 | 66 | 1.3E-21 | ||
| Coils | 115 | 135 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi1g1v0206300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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