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Lj2g3v2087990.1

Overview

Field Value
Gene ID Lj2g3v2087990
Transcript ID Lj2g3v2087990.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nuclear transcription factor Y subunit B-6 [Glycine max] gi|356576945|ref|XP_003556590.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11064
1 89 89 8.50E-69 –
SUPERFAMILY
SSF47113
1 87 87 4.03E-33
IPR009072
Pfam
PF00808
1 63 63 3.80E-26
IPR003958
Gene3D
G3DSA:1.10.20.10
1 87 87 2.20E-41
IPR009072
PANTHER
PTHR11064:SF20
1 89 89 8.50E-69 –
PRINTS
PR00615
28 46 19 5.40E-14 –
ProSitePatterns
PS00685
31 47 17 –
IPR003956
PRINTS
PR00615
47 65 19 5.40E-14 –
PRINTS
PR00615
66 84 19 5.40E-14 –
MobiDBLite
mobidb-lite
88 119 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v2087990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2087990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.