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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004358
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We have found 52 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.543s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0108729.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040790 47047766 +
2 domain predictions
2 GO terms
Lj0g3v0108739.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040916 47047707 +
2 domain predictions
2 GO terms
Lj0g3v0267349.1
n.a. PREDICTED: Pyruvate dehydrogenase [lipoamide] gi|356556464|ref|XP_003546545.1| chr0 138509827 138512907 +
2 domain predictions
2 GO terms
Lj0g3v0272749.1
n.a. PREDICTED: histidine kinase 1-like [Glycine max] gi|356561130|ref|XP_003548838.1| chr0 141331066 141337466 +
2 domain predictions
2 GO terms
Lj0g3v0272749.2
n.a. PREDICTED: histidine kinase 1-like [Glycine max] gi|356561130|ref|XP_003548838.1| chr0 141333876 141337466 +
2 domain predictions
2 GO terms
Lj0g3v0302209.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr0 157184005 157189594 +
2 domain predictions
2 GO terms
Lj0g3v0327979.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr0 171441705 171447984 -
2 domain predictions
2 GO terms
Lj1g3v1798710.1
n.a. Hybrid signal transduction histidine kinase K [Medicago truncatula] gi|357465939|ref|XP_003603254.1| chr1 21715696 21721815 +
2 domain predictions
2 GO terms
Lj1g3v4865380.1
n.a. PREDICTED: ethylene response sensor 1-like isoform X1 [Cicer arietinum] gi|502112644|ref|XP_004494397.1| chr1 59041645 59046222 +
2 domain predictions
2 GO terms
Lj2g3v0136400.1
n.a. histidine kinase 2 [Lotus japonicus] gi|113911568|gb|ABI48270.1| chr2 2426388 2431144 +
2 domain predictions
2 GO terms
Lj2g3v1681040.1
n.a. PREDICTED: histidine kinase 1-like isoform X2 [Cicer arietinum] gi|502161397|ref|XP_004512150.1| chr2 26074727 26082256 -
2 domain predictions
2 GO terms
Lj2g3v1681040.2
n.a. PREDICTED: histidine kinase 1-like isoform X1 [Cicer arietinum] gi|502161395|ref|XP_004512149.1| chr2 26074727 26084598 -
2 domain predictions
2 GO terms
Lj2g3v2925240.1
n.a. PREDICTED: histidine kinase CKI1-like [Cicer arietinum] gi|502118202|ref|XP_004496150.1| chr2 38181600 38186040 +
2 domain predictions
2 GO terms
Lj2g3v3338860.2
n.a. PREDICTED: histidine kinase 2-like [Glycine max] gi|356553458|ref|XP_003545073.1| chr2 42467555 42476518 +
2 domain predictions
2 GO terms
Lj2g3v3338860.3
n.a. PREDICTED: histidine kinase 2-like isoform X1 [Cicer arietinum] gi|502099880|ref|XP_004491582.1| chr2 42472194 42476518 +
2 domain predictions
2 GO terms
Lj3g3v0461750.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984353 -
2 domain predictions
2 GO terms
Lj3g3v0461750.2
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984648 -
2 domain predictions
2 GO terms
Lj4g3v2249050.1
n.a. PREDICTED: Pyruvate dehydrogenase [lipoamide] gi|356556464|ref|XP_003546545.1| chr4 30983228 30985497 -
2 domain predictions
2 GO terms
Lj4g3v3113820.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776257 41783546 -
2 domain predictions
2 GO terms
Lj4g3v3113820.3
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776257 41782025 -
2 domain predictions
2 GO terms
Lj4g3v3113830.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776264 41783055 -
2 domain predictions
2 GO terms
Lj5g3v0473540.1
n.a. PREDICTED: histidine kinase 5-like [Cicer arietinum] gi|502125167|ref|XP_004498825.1| chr5 4717697 4725814 +
2 domain predictions
2 GO terms
Lj5g3v0473540.2
n.a. PREDICTED: histidine kinase 5-like [Cicer arietinum] gi|502125167|ref|XP_004498825.1| chr5 4717697 4725814 +
2 domain predictions
2 GO terms
LotjaGi1g1v0008500.1
n.a. Histidine kinase; TAIR: AT5G35750.1 histidine kinase 2; Swiss-Prot: sp|Q9C5U2|AHK2_ARATH Histidine kinase 2; TrEMBL-Plants: tr|A0A023W2C6|A0A023W2C6_LOTJA Histidine kinase 2; Found in the gene: LotjaGi1g1v0008500 LjG1.1_chr1 1114796 1127418 -
2 domain predictions
2 GO terms
LotjaGi1g1v0060100.1
n.a. Histidine kinase; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|V7BJF4|V7BJF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0060100 LjG1.1_chr1 8368323 8373712 -
2 domain predictions
2 GO terms
LotjaGi1g1v0373800.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|A3BE68|OHK1_ORYSJ Probable histidine kinase 1; TrEMBL-Plants: tr|V7AWB7|V7AWB7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0373800 LjG1.1_chr1 85209589 85215639 +
2 domain predictions
2 GO terms
LotjaGi1g1v0762500.1
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133514685 133519558 +
2 domain predictions
2 GO terms
LotjaGi1g1v0762500.2
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133515378 133519076 +
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.1
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.3
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456175 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.4
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.5
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.6
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1443526 1456488 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.7
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.8
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379900.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87654085 87670051 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379900.2
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87658002 87669871 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.1
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632820 5638974 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.2
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632920 5639127 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.4
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|A0A1J7HIG6|A0A1J7HIG6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
2 domain predictions
2 GO terms
LotjaGi4g1v0129800.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|K7MGY5|K7MGY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129800 LjG1.1_chr4 18987983 18994802 +
2 domain predictions
2 GO terms
LotjaGi4g1v0313600_LC.1
n.a. Pyruvate dehydrogenase kinase; TAIR: AT3G06483.1 pyruvate dehydrogenase kinase; Swiss-Prot: sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase ](acetyl-transferring)] kinase, mitochondrial; TrEMBL-Plants: tr|A0A0S3RH61|A0A0S3RH61_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0313600_LC LjG1.1_chr4 69043217 69046704 +
2 domain predictions
2 GO terms
LotjaGi4g1v0366900.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74675995 74684564 +
2 domain predictions
2 GO terms
LotjaGi4g1v0366900.2
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676046 74684422 +
2 domain predictions
2 GO terms
LotjaGi4g1v0366900.3
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676694 74683363 +
2 domain predictions
2 GO terms
LotjaGi4g1v0459800.1
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061838 83069902 -
2 domain predictions
2 GO terms
LotjaGi4g1v0459800.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061938 83069826 -
2 domain predictions
2 GO terms
LotjaGi4g1v0459800.3
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061985 83069668 -
2 domain predictions
2 GO terms
LotjaGi5g1v0050100.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8435089 8444095 +
2 domain predictions
2 GO terms