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LotjaGi1g1v0060100.1

Overview

Field Value
Gene ID LotjaGi1g1v0060100
Transcript ID LotjaGi1g1v0060100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Histidine kinase; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|V7BJF4|V7BJF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0060100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8368323..8373712) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGGTCTCTTTTTCTCATTCTACAATGATCATGATCAAACTCTAGCAATGTACTCTAACTCATCATCATCTTTGGCTT CAAGTGGGGGTGTCTCAAATAAGACCTTATACTATATTCAACCAGTGAACAATGAAACTGGAGAGGTTTATGGGGAAGCT GTGATATCTAACTCCTCTATCAATACAAGCTGGATTGCAGAAGCACTTAATGCTTCACATGGATATGCCTCATTGGGAAC CAAGTGGGGCAATGACCATGATCTTTTGTTCCTCAGTTCAGCAAGAATCACAAGAACGGGGGTGATCTCTCTTGGGTTTT CAGCAAAAGCAATAACTGATTTTATCACTCGCCTTGATCATCAAGGCATAACCTCATATTTGGCTACCAAAAATGGAAAA GTTCTTGCAGAAGGGATTCAACATAGAAGTTTGGTCATTTCTAACCAATCAGGGAATGCAAATGGGGATCCAATAAGGAA TGAAGGCAGTGTCTCGTGTAAGGAGGAAGCTGTAGGTTCTATCTTGAATTTTCAGGATGCTAACTATTTGATTCACTGCT ACCCAATTGATATTATGGGAATAGAATCGGTACGTCTTTTATTTGTTTAGTCACAACATGGAATTATTTTCAATATACTT CCTTACAACAGGGATTGTAATTTCTCATTATATATGCAATATGTTAAGTTCACTATCTGGTTTGAATGGTAATGAAAGAT ATATTATTTTTAAGGCCTTGTGTATGCAATATCTGGTTTGAATGAATAGTTGAGAAAGAATGAAAGCAAGTAATAATGGC TGGAATTAACATATATGTAATCGGATTTATATGTCACTTTTCCTGATTTCTAATAAAAATTTAACACCTTAGAAAAATAA TTTAACAGTATAAATATAGTTAAATAGATAGATAGATTTGCTAAGATATTACTATATTTTCATCCCAACTTGATTATGTT TCAGGTGTATGTTTTGGCTATCCCACAAAATGGATTTCTCAGCTTTGATCTAAACTACCAGAAAAAGGGGTTGACACTGT TGATTGTTATGATGGTCATGACATTTGTGGCTATCTTTAGTTTTCTATTCATAAATGTTAAAACCACAAGGCGAGAAATG CATTTGTGTGCCTTACTCATCAAACATATGGAAGCCACTCAACAAGCTGAACGAAAGAATATGAATAAAAGCCTTGCTTT TGCTAGTGTCAGCCATGATGTTCGCACTTCTCTTGCAGGCCTTACTGGTTTGATAGAAATGTCTAATGAGTTAGCTGACC ATGGTTCAGAATTGGAGACTAATCTAAAACAAATGCAGGATTGTACCCAAGACTTACTAGGTAACTTCATTGTACCTAAA TTTTATGTGATTATATCATAACATAAAATTCTGATGTGGATCTAACATTCGCGTGTATATGAAAACTTCATATTGGGACA AATTCGATTCTCACAGAATCATTAAGTGTGTGTTTGGTTCTCTGTTAGGTACATGTCTCTACATGGATTGAAATGAATAT ATGCTTGCAAAGCCTAACTTGTTTTCTTTGTGTACAATTTTGTTTAGGACTATTAAACTCTACACTTGATGCAAGCAAAA TTGAGTCGGGAAAAATGCAACTTGAGGAAGAGGAATTTGATATATTCCATCTCCTTGAAGATGTCGTTGATTTATACCAT CCTGTGGCCATGAAGAAAGGTGTAGATCTTATATTTGACCCTTGTGATGGTTCAATCATCAAATATTCACAAGTGAAAGG TGACAAGGGAAAGCTTAAGCAAGTTTTGTGTAATTTACTGAGCAACGCTGTCAAATTTACTGATGGAGGGCACATAACAG TTCGGGCATGGGCTCTGAAGCCAACATTAGAGAGCTCAATGATCAAGACTAATCAATATAGTGTCACAAAACGTTTATCA TGGTTATTTAATAAGAAAAATGAAGCACATGAGGACCTTGAAGCAGCCATGAATTCAACCCAACAAGATTTGAATTATAT GGATTTTATGTTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAGGAGAACTACAAGTCTGTGTTTGAGAATTATGTTC AAGTCAAATATACTCAGGGAGGAACCGGGTTAGGACTTGGGATTGTGCAGTCTTTGGTAGGTATTACTTACTAGTCATTC CCAAGTACTTGTGAGTTTTTCTTTCATTGAGCCACATATTCTCTTGATAAAAATCTTATTTGATTTTCTTTAGGTGCGTT TGATGCACGGAGATATTGGAATTATGGACAAGGATATTGGAGAAAAAGGAACGTGTTTCAGGTTCAATGTGCTCCTCACA TTATTTGAGAGTGAGACAGTGAACGATGCTAGCGCAAGGGAATATCTTCAGCAAGGATCAGGTGACAAGACCCAAGCTTC AGTGAGAACCATTCATACTACTAGTTCTGCTTCAAGCATCTTTTCTGTGAGTCCCAGGTTACATATGTGCAGCTCTAGTC CTAGGCCTGAGGCTTCCCGTGTTGTTCTTTTGATTGGAGACGAGGAGCGCCGAAGGACTTGTCAGAGGTTCATGGAAAGC TTAGGGATTAAAGTCAAGGTTGTGAAGAATTGGAAAAATCTCTCTAATACTCTCGAGAAGATCAAACAGAAGTGTTACCG TTATAATGGCCAAAGTTCTTCAGATTCTTCCAGTTTGAGTTCTCGGTCCACACCTCATAATTCTTCTGCTAAAGCTAGAG GAGTTCCTTTGAGTTCTATGGATGGAATTGAGTATTTACCTTCAGTGTTCAAGAAGACAGAAATTGGAGTTGCCCCGGGT TTCATCTTGATTGTCATTGATGCAAATGCAGGACCATTTTCTGAATTTGATATGATTGTATCCAACTTCAAGAAAAACAT TTCCAACCCTTGTAAGGTTGTTTGGTTGGATAAACCACTTATGCGTAGTATCAACCTCGAAACACACAATCAAGATGACA TCATATCCAAACCGTTTCATGGTAGTCGTTTATTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTACATGGAAAACA AATTTAAGTAAAGCTCAGAGAGAAAGAACTCCTGATATAGCTGGAAGTACTTGTAGTAGAGACTCAAGTTTATCAAGATA CCACTCTCCTCAGTTGATGGACAGATCACAAGTATCTCCACCTGATGAAAGTCCATGTCCAAGTGTTGAACAAGTTTGCA AAGGAACTCAGAAATCCTATGGTGGAAAGTCTATTGTTAATCAAGGAGAAATGCAAGAGTGTGGAGACTCAAGCAACGAT AACCAGCCTTTAAGGGGCAAGAAATTTTTGGTTGTTGAGGACACTAAAGCGTTAAGACATTTAGCTTTGTTTAAATTGAA GTCCCTTGGTGCAGCTACAGAGGAATGTGACAATGGTGAAAAGGCAGTGCAGCTAGTTAAGAAAGGTCTAGCCAAACCTC CCTATGATTGCATCTTAATGGACTGTCAGGTAACGACTACGGTTCCCACTCCTCTCATTTTGTTATCTTATGACTTATGC GGTTTCCATTCTCCACCATATGTATGATATGCTCATCAATTTTATTTCAGCTAGCAAGTTGGACTGAATGTTGACATTAT TACACAGAACTTCTTCTTTCATTTCTATATGCTTTTACCAAATGCTAGATCCACTGTCTACCTATTTGTTTCTTAAGTTG AATGAGTCATTCAAGATTTATTGAAGGTTAAATTCATAATCAATGTTTAGAAGTCTATGAAATATAACTCTGTCAATAAT AATTCATAACCTGACTACAAGTCACCATAGAATATATTGATAATACAGATTTTAAAAGAAATAATTGAATTTTCGATCAA TATAATATGTGATTTAATTTTCTATATAATGAATTCAACAGATGCCAGTGATGGATGGGTTTGAGGCAACAAGACAGATA CGAGAGATGGAGAAGACCTATAGTGTTCACATTCCGATTATTGCATTATCTGCTGACAAAATAACGACAGAGACTGGAAT GGACTTTCATTTAGTTAAGCCCTTTGATAGAGAGGATTTAATTGAAGCCATCAGATACATACAGAGAAAGGAGTTATGTG CATCTTAGAGTTAAGAGGCTATGGCTTTTGGACCTTGTATTGGAGGAAAACATGTTTTAATTTTGGAATTTAAATTTGGT TCTATAAAATTCTGACTGTTGCTATCATGGTTTTTTCCTTAGTGACATAGAACATATCGAAGTGAGTATTATAGTGGATA TTTAAGCAGTCAGAAGAGTATTTTAAGAAGAATGTGTTTGGAAAAGTGGCCTGAAAACTACAATCAACTGAACTGAATTG TTGAATTAAATAAGTACAAAAAACCTGAAATTTTCATAGGTTTTGTCAATAATTATATGCATAGCTACTGTCCAGCTAGT CCTTTTCCTTGTTTCAAAAACTACCTTAAATAATTTCAATCCACAAGCATGATCATTATGTGAAATAAAAAAACCACTTA TTTCTACAAGCAGGATTAAAATATGAATAAATAAATAAAAAACACTTCTCAAATTTCTAGGATAATATGGACCTTTACGC CATGCCCATTTTCCATTTCAAGTATCTTTCTACAATGTCAGGATTAAAATATGAATAAATAAATAAAAAACACTTCTCAA ATTTCTAGGATAATATGGACCTTTACGCCATGCCCATTTTCCATTTCAAGTATCTTTCTACAATGTCCAGTCCAATGAGT TCTTTTACCACCGGCATGGTTGCAGGGACCTCCAACTGAAATGTTGAATCTGGTCCATCTAAGTTGCTCCATGACAGAAG CTGTTTCCTTGCTTCTTTGATAGCTGCTCTTGTGGCACAGTGAACAGAAGCTGCTAAAAGTAGAGGTGGCTCACCAGAAG CTGCAGCAACAAATTATTATTTTTTTTCATTTGGAGAACCTTTCTCAATCTTATTAACCGTCTAAAATAACAGTCAGAAA CACTGCGACATGCCAATATATTTTTCCAAACTATTATTTAGACAATTGAATTGATTAATGCTAGCGGTACAAAAATGTGT ACCACTAGCAACTAACTAATCAAGACTAACAACTAGGGTCCCCTGTTTCAAGTATAAGTGCTACGCATTTTTAGAGAATA AACTACAAAAAAAAACCAGTATGCAGATATAATTCAACATGTAGACAATTGAGAACTCCTTAATCATACCCTTTGAAGAG AGAACACGATGCTGGTGATGCCCACTATTGAGGATTTGAACATTAAACTGTAGAGGAATAGTATCTATTGTGGGTATTTT GTAATTCCATGTCCCGTCTGCCAAGACCAAACCATCAAGATTTGTTTCATATTCTTCAAGCATGAAAAATCCTAATCCCT GAACAAAAGCTCCTTCAATCTGCAGGGTGC 

CDS sequence (LotjaGi1g1v0060100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACTCTAACTCATCATCATCTTTGGCTTCAAGTGGGGGTGTCTCAAATAAGACCTTATACTATATTCAACCAGTGAA CAATGAAACTGGAGAGGTTTATGGGGAAGCTGTGATATCTAACTCCTCTATCAATACAAGCTGGATTGCAGAAGCACTTA ATGCTTCACATGGATATGCCTCATTGGGAACCAAGTGGGGCAATGACCATGATCTTTTGTTCCTCAGTTCAGCAAGAATC ACAAGAACGGGGGTGATCTCTCTTGGGTTTTCAGCAAAAGCAATAACTGATTTTATCACTCGCCTTGATCATCAAGGCAT AACCTCATATTTGGCTACCAAAAATGGAAAAGTTCTTGCAGAAGGGATTCAACATAGAAGTTTGGTCATTTCTAACCAAT CAGGGAATGCAAATGGGGATCCAATAAGGAATGAAGGCAGTGTCTCGTGTAAGGAGGAAGCTGTAGGTTCTATCTTGAAT TTTCAGGATGCTAACTATTTGATTCACTGCTACCCAATTGATATTATGGGAATAGAATCGGTGTATGTTTTGGCTATCCC ACAAAATGGATTTCTCAGCTTTGATCTAAACTACCAGAAAAAGGGGTTGACACTGTTGATTGTTATGATGGTCATGACAT TTGTGGCTATCTTTAGTTTTCTATTCATAAATGTTAAAACCACAAGGCGAGAAATGCATTTGTGTGCCTTACTCATCAAA CATATGGAAGCCACTCAACAAGCTGAACGAAAGAATATGAATAAAAGCCTTGCTTTTGCTAGTGTCAGCCATGATGTTCG CACTTCTCTTGCAGGCCTTACTGGTTTGATAGAAATGTCTAATGAGTTAGCTGACCATGGTTCAGAATTGGAGACTAATC TAAAACAAATGCAGGATTGTACCCAAGACTTACTAGGACTATTAAACTCTACACTTGATGCAAGCAAAATTGAGTCGGGA AAAATGCAACTTGAGGAAGAGGAATTTGATATATTCCATCTCCTTGAAGATGTCGTTGATTTATACCATCCTGTGGCCAT GAAGAAAGGTGTAGATCTTATATTTGACCCTTGTGATGGTTCAATCATCAAATATTCACAAGTGAAAGGTGACAAGGGAA AGCTTAAGCAAGTTTTGTGTAATTTACTGAGCAACGCTGTCAAATTTACTGATGGAGGGCACATAACAGTTCGGGCATGG GCTCTGAAGCCAACATTAGAGAGCTCAATGATCAAGACTAATCAATATAGTGTCACAAAACGTTTATCATGGTTATTTAA TAAGAAAAATGAAGCACATGAGGACCTTGAAGCAGCCATGAATTCAACCCAACAAGATTTGAATTATATGGATTTTATGT TTGAAGTGGATGATACAGGAAAAGGAATTCCCAAGGAGAACTACAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAATAT ACTCAGGGAGGAACCGGGTTAGGACTTGGGATTGTGCAGTCTTTGGTGCGTTTGATGCACGGAGATATTGGAATTATGGA CAAGGATATTGGAGAAAAAGGAACGTGTTTCAGGTTCAATGTGCTCCTCACATTATTTGAGAGTGAGACAGTGAACGATG CTAGCGCAAGGGAATATCTTCAGCAAGGATCAGGTGACAAGACCCAAGCTTCAGTGAGAACCATTCATACTACTAGTTCT GCTTCAAGCATCTTTTCTGTGAGTCCCAGGTTACATATGTGCAGCTCTAGTCCTAGGCCTGAGGCTTCCCGTGTTGTTCT TTTGATTGGAGACGAGGAGCGCCGAAGGACTTGTCAGAGGTTCATGGAAAGCTTAGGGATTAAAGTCAAGGTTGTGAAGA ATTGGAAAAATCTCTCTAATACTCTCGAGAAGATCAAACAGAAGTGTTACCGTTATAATGGCCAAAGTTCTTCAGATTCT TCCAGTTTGAGTTCTCGGTCCACACCTCATAATTCTTCTGCTAAAGCTAGAGGAGTTCCTTTGAGTTCTATGGATGGAAT TGAGTATTTACCTTCAGTGTTCAAGAAGACAGAAATTGGAGTTGCCCCGGGTTTCATCTTGATTGTCATTGATGCAAATG CAGGACCATTTTCTGAATTTGATATGATTGTATCCAACTTCAAGAAAAACATTTCCAACCCTTGTAAGGTTGTTTGGTTG GATAAACCACTTATGCGTAGTATCAACCTCGAAACACACAATCAAGATGACATCATATCCAAACCGTTTCATGGTAGTCG TTTATTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTACATGGAAAACAAATTTAAGTAAAGCTCAGAGAGAAAGAA CTCCTGATATAGCTGGAAGTACTTGTAGTAGAGACTCAAGTTTATCAAGATACCACTCTCCTCAGTTGATGGACAGATCA CAAGTATCTCCACCTGATGAAAGTCCATGTCCAAGTGTTGAACAAGTTTGCAAAGGAACTCAGAAATCCTATGGTGGAAA GTCTATTGTTAATCAAGGAGAAATGCAAGAGTGTGGAGACTCAAGCAACGATAACCAGCCTTTAAGGGGCAAGAAATTTT TGGTTGTTGAGGACACTAAAGCGTTAAGACATTTAGCTTTGTTTAAATTGAAGTCCCTTGGTGCAGCTACAGAGGAATGT GACAATGGTGAAAAGGCAGTGCAGCTAGTTAAGAAAGGTCTAGCCAAACCTCCCTATGATTGCATCTTAATGGACTGTCA GATGCCAGTGATGGATGGGTTTGAGGCAACAAGACAGATACGAGAGATGGAGAAGACCTATAGTGTTCACATTCCGATTA TTGCATTATCTGCTGACAAAATAACGACAGAGACTGGAATGGACTTTCATTTAGTTAAGCCCTTTGATAGAGAGGATTTA ATTGAAGCCATCAGATACATACAGAGAAAGGAGTTATGTGCATCTTAG 

Protein sequence (LotjaGi1g1v0060100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYSNSSSSLASSGGVSNKTLYYIQPVNNETGEVYGEAVISNSSINTSWIAEALNASHGYASLGTKWGNDHDLLFLSSARI TRTGVISLGFSAKAITDFITRLDHQGITSYLATKNGKVLAEGIQHRSLVISNQSGNANGDPIRNEGSVSCKEEAVGSILN FQDANYLIHCYPIDIMGIESVYVLAIPQNGFLSFDLNYQKKGLTLLIVMMVMTFVAIFSFLFINVKTTRREMHLCALLIK HMEATQQAERKNMNKSLAFASVSHDVRTSLAGLTGLIEMSNELADHGSELETNLKQMQDCTQDLLGLLNSTLDASKIESG KMQLEEEEFDIFHLLEDVVDLYHPVAMKKGVDLIFDPCDGSIIKYSQVKGDKGKLKQVLCNLLSNAVKFTDGGHITVRAW ALKPTLESSMIKTNQYSVTKRLSWLFNKKNEAHEDLEAAMNSTQQDLNYMDFMFEVDDTGKGIPKENYKSVFENYVQVKY TQGGTGLGLGIVQSLVRLMHGDIGIMDKDIGEKGTCFRFNVLLTLFESETVNDASAREYLQQGSGDKTQASVRTIHTTSS ASSIFSVSPRLHMCSSSPRPEASRVVLLIGDEERRRTCQRFMESLGIKVKVVKNWKNLSNTLEKIKQKCYRYNGQSSSDS SSLSSRSTPHNSSAKARGVPLSSMDGIEYLPSVFKKTEIGVAPGFILIVIDANAGPFSEFDMIVSNFKKNISNPCKVVWL DKPLMRSINLETHNQDDIISKPFHGSRLFQVIKLLPEYGGTWKTNLSKAQRERTPDIAGSTCSRDSSLSRYHSPQLMDRS QVSPPDESPCPSVEQVCKGTQKSYGGKSIVNQGEMQECGDSSNDNQPLRGKKFLVVEDTKALRHLALFKLKSLGAATEEC DNGEKAVQLVKKGLAKPPYDCILMDCQMPVMDGFEATRQIREMEKTYSVHIPIIALSADKITTETGMDFHLVKPFDREDL IEAIRYIQRKELCAS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 202 202 -
PANTHER 5 968 964 0.0
PANTHER 5 968 964 0.0
TMHMM 203 225 23 -
Phobius 203 223 21 -
Phobius 224 975 752 -
SUPERFAMILY 239 322 84 6.28E-11
Gene3D 241 321 81 2.8E-14
CDD 252 316 65 8.75749E-8
SMART 254 320 67 1.8E-9
Pfam 257 320 64 7.4E-8
ProSiteProfiles 261 525 265 36.816
SUPERFAMILY 309 521 213 1.04E-32
Pfam 370 523 154 5.2E-24
SMART 370 525 156 1.3E-27
CDD 375 523 149 3.81082E-16
Coils 426 446 21 -
PRINTS 452 466 15 7.2E-8
PRINTS 483 501 19 7.2E-8
MobiDBLite 635 659 25 -
MobiDBLite 635 658 24 -
MobiDBLite 767 814 48 -
MobiDBLite 774 814 41 -
Gene3D 832 972 141 6.9E-35
SUPERFAMILY 847 967 121 1.57E-27
SMART 851 964 114 1.0E-24
ProSiteProfiles 852 968 117 32.463
Pfam 854 965 112 1.2E-17
CDD 854 965 112 4.51628E-27

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
Biological process Phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Biological process Phosphorylation The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
Molecular function Transferase activity, transferring phosphorus-containing groups Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0060100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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