Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006058
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.226s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3740570.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 42988414 42994267 +
2 domain predictions
1 GO term
Lj1g3v3751710.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43041544 43045809 -
2 domain predictions
1 GO term
Lj1g3v3751710.2
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43043427 43045809 -
2 domain predictions
1 GO term
Lj1g3v4897990.1
n.a. PREDICTED: ferredoxin-3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502120992|ref|XP_004497151.1| chr1 59371732 59373840 +
2 domain predictions
1 GO term
Lj3g3v1694660.1
n.a. PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1| chr3 21618391 21625497 -
2 domain predictions
1 GO term
Lj4g3v2690750.1
n.a. 2Fe-2S ferredoxin-like superfamily protein, A,ATFD2 [Theobroma cacao] gi|508706205|gb|EOX98101.1| chr4 36223875 36225098 -
2 domain predictions
1 GO term
Lj6g3v2274750.2
n.a. PREDICTED: ferredoxin-1, chloroplastic-like [Cicer arietinum] gi|502076836|ref|XP_004485473.1| chr6 26583174 26584985 +
2 domain predictions
1 GO term
LotjaGi1g1v0059700.1
n.a. Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|A0A1J7IPN3|A0A1J7IPN3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059700 LjG1.1_chr1 8322214 8331842 +
2 domain predictions
1 GO term
LotjaGi1g1v0059900.1
n.a. Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059900 LjG1.1_chr1 8348168 8357495 +
2 domain predictions
1 GO term
LotjaGi1g1v0059900.2
n.a. Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059900 LjG1.1_chr1 8348335 8356777 +
2 domain predictions
1 GO term
LotjaGi1g1v0060000.1
n.a. Aldehyde oxidase; TAIR: AT2G27150.1 abscisic aldehyde oxidase 3; Swiss-Prot: sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0060000 LjG1.1_chr1 8360608 8369978 +
2 domain predictions
1 GO term
LotjaGi1g1v0060000.4
n.a. Aldehyde oxidase; TAIR: AT2G27150.1 abscisic aldehyde oxidase 3; Swiss-Prot: sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0060000 LjG1.1_chr1 8360639 8369316 +
2 domain predictions
1 GO term
LotjaGi1g1v0616900.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116347831 116354076 +
2 domain predictions
1 GO term
LotjaGi1g1v0616900.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116348266 116353523 +
2 domain predictions
1 GO term
LotjaGi1g1v0617600.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116432456 116441491 -
2 domain predictions
1 GO term
LotjaGi1g1v0617600.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437122 116441459 -
2 domain predictions
1 GO term
LotjaGi1g1v0617600.3
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437230 116441401 -
2 domain predictions
1 GO term
LotjaGi1g1v0765600.1
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 LjG1.1_chr1 133884065 133886884 +
2 domain predictions
1 GO term
LotjaGi1g1v0765600.2
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 LjG1.1_chr1 133885718 133886182 +
2 domain predictions
1 GO term
LotjaGi3g1v0288100.1
n.a. Xanthine dehydrogenase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0B2RE38|A0A0B2RE38_GLYSO Xanthine dehydrogenase; Found in the gene: LotjaGi3g1v0288100 LjG1.1_chr3 58227435 58254190 +
2 domain predictions
1 GO term
LotjaGi3g1v0288100.4
n.a. Xanthine dehydrogenase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0R0G5H5|A0A0R0G5H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0288100 LjG1.1_chr3 58227777 58253962 +
2 domain predictions
1 GO term
LotjaGi3g1v0288100.5
n.a. Xanthine dehydrogenase/oxidase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0B2RM17|A0A0B2RM17_GLYSO Xanthine dehydrogenase; Found in the gene: LotjaGi3g1v0288100 LjG1.1_chr3 58227777 58253962 +
2 domain predictions
1 GO term
LotjaGi3g1v0477000.1
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000 LjG1.1_chr3 89355985 89358511 -
2 domain predictions
1 GO term
LotjaGi3g1v0477000.2
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000 LjG1.1_chr3 89356672 89357139 -
2 domain predictions
1 GO term
LotjaGi4g1v0387900.1
n.a. Ferredoxin; TAIR: AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q43517|FER1_SOLLC Ferredoxin-1, chloroplastic; TrEMBL-Plants: tr|I3S4Y2|I3S4Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387900 LjG1.1_chr4 76632797 76634063 -
2 domain predictions
1 GO term