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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617600 |
| Transcript ID | LotjaGi1g1v0617600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116437230..116441401) extracted from Lotus japonicus Gifu genome v1.2.
ACAACAATGGCGACGTTGATGCTGAAGAAAGCGTTGTCTAAGGTTCCTCCCTCACCGGCATCATCACCGCCGTGGAGGCT CGCTCTCCTCCGTGCCCACGCGTCGGAGACCCAAGCCCAGATGGTGGAACCCAAAGCCCGAGAAACAACCCGGATGAAGA AGTTCCAAATCTACCGATGGAACCCTGAGAATCCGACGAAGCCGGAGCTGAAGGAATACACCATCAACCTCAAGGATTGC GGCCCTATGGTCCTCGACGCTCTCATCAAGATCAAGAATGAGGTCGATCAGACCCTCACCTTCCGCCGTTCCTGCAGGGA AGGCATCTGTGGCTCATGCGCGATGAACATCGACGGTTGCAACGGGCTTGCTTGCCTGACGGAGATTCCGTCGGAGGCGA AGGAGACGACGGTGACGCCGCTGCCTCATATGTTTGTGATTAAGGATTTGGTGGTGGATATGACGAATTTCTATCAGCAG TATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGTCCGCCGCCTGTTCCAGGGAAGGAGATTCTGCAGAGCAAGAAGGA TCGGGAAAAGTTGGATGGGATGTATGAGTGTATTCTGTGCGCTTGTTGCAGTACTTCTTGCCCTAGTTATTGGTGGAACC CTGAATCTTATCTTGGTCCTGCTGCTTTGCTCCACGCTAATAGGTATCAATGTTTTCTTCTGTCTCTCTGATTTGGTGCT TTTCCTGTTTTCATCAATTTTATACTAGTGCAACATGTAATGGTGTTTATTGCATTCCATGTGTTTGTTGTATTGTTTAG CTGAGTTAAATTGCATTTGAAGATTGGGTGGAGAAAGGGTTATACTTATAGGTTGTGTCTGCCATGCTATGGATAATTGT TTGTTGATTTTCTCACATGATATTTTGGGGATGAGATGAGAATTTTTGTTGTTATTTATGTACATTGTTTGCTGGAAAGC TGTGTGTGTGCTGTGTTTAGGTTTGAACAATTAACTTGCACAGAGACCGTTTTTAATGTGGAGGAATTTGAGTTGCTGTT CTTGGTGCTGAAGTTTGTTTCTTTAGCCATTTATAAGATGAATCAAAATCTTGTGTCCCAAGGCTTTGTATCATTTCTTG GTCGCACCATTGAAATTTTACAATTTATTTTTTAAAAGTAATAGGTGAGACAAATGCAAACCTAAATGAGTACTTTTTAA TTGACTTGAAAGTATTTTATTGGTGAGATTGAAAAGTTAGACATGGAAATAGATAGAGGATTTTCATCCTTATAAGGTGG CTCTTTTTCGCTCTCTAATTGTTTTTGTGTCAGGAAATGAGGGAGGCTGATGAAATAGGAATTTCAGTACCTTTTCCTTA CTTTAAGGAATAACAGGATCTTCTCACTGGAGTTTAGCTCGTGTATTGTTCTTTCCTTTGATGAATTTTCTGCCAATGTC TTTTTGCCCCGAACTTTTTATTTTTAATGCTGTATGAATCTCAATAGGGTATTAATACACATTCATTTTAAGTGCCTTGT CTTGGTCGATTGGCACCATTGCTAATGTTCACTTAATTCTGTTAGTGCCTTTCATTGAATTTGCTCATTAATTGTTAGTA GAACATGTTGAGATACTTCTCCTTGAAATCCATGGCACATAGTCTGCTGCAGCTTGAATTTCAATTAATTCTTTCTTAAC ACCCTCAAAAAAAATTCTACAACACTAAACAAAGAAAGGAAAAACAGGTAGAATCTATTGGTAATTACCTGTTGGGTAAT GTGGTTTCTTGTTCGAAGCTGAGATGTTGTCTATGATTGTATTTGCAGGTGGATAAGCGACAGTCGTGATGAGTACACAA AGGAGAGGCTGGAGGCCATTAACGATGAATTCAAGCTCTATCGCTGCCACAGCATATTGAACTGTGCCGATGCCTGCCCT AAGTTGTTGAACCCTGGGAAGCAAATCCAACAGATCAAGTCAGCTCAGCCAAAAGCTTGAAAATCTGCTGTGAGAAATGA TGGTGTTTTCTTGTGAATTTTGGTTTTTCTTCAGAGGTGGGGATAATTTTGCTATATCTATCCATTTATATAATATACTA AATCTGAAGTGTGAATTACAATAGCTTCTCAACTATTAATCATAATTTTTCTTTCCCAAGATGAGCAAATTTGCTGTCAG TTTAAATATTCCATTCTGTTCTTTTCAAACTTCAAATATAGTAGTATTCTTTTAGTTTCACAGTGCCTTTTAGTTTCTCT CCTAACTCCTCTATAGCTATGCTTCTCTAATTCATTCCAATTGCTGATCTTACTAGGTTTTTACCCCCTCCCCACCCTCA GAAATACACAAAATTAATTTCTGTTACTACATGTACTGATGAAATATTTTGTTAACTTTTTATTCGGCCTCCAAATATTT CGCAGATTAATTATACTAGTTGAACTGAAAATGGTGAAACATAAATTGATTGATTAATTATTAGGATGATATCGTATTAT ACTAGTTATGAACTATATTAACTAGTAATTCTTTCAAATTGTGATTGTCTAAAAGAACGAAGTTCTATTTAAATTTTTTC TCGTGTAAAACATTTGTAGTATCTGTTTATTCCAAAAAAAAAAATAGCAATATATCCTCCTAAGTGAAAAGAATCCTGGA TTACCCACTCCCTAATTAGCGATACCATTCCTTCCCAATCGTGTTAAATTCCAAGGCTTGTTGATCATCATTTGCTTGTT GGAATCGGAACCTATGTTTTCTGGTTATCAAATATCCGTGAGGGCGGCTTTTTTCATAATCTGCCATCATTATTTGTCAA ATATGGCGGTTTTTTAGCACTCCGCCACGGTCCACCATCTGCCATTAACAACATTAGTTGGTAGAGACCTGCTCCGGGGT CGAGCCTTACTAAATGGGGCTGCCAATACCGCCGCTGCCTAGCCTAAGTTTCATTTCCTATATTTTTTTTTATTATGGTA TGGTTAAAGGAATTGTTTTAACGTAGCAATGTATCATTAAATGACAGCATAAATGATGTAAAGGAACATCCTATATACCA ACTCCCATGTTTATTATTTGCACAAGTGCAACGCTTCCTAGAGATATGACTAAATTAGTCTTTATATTATCCTCACATTT AAACTGGTTTTTGGAGTAAAGTTAAACCTAACCCAAGTTTAAAAGATTTATGATCCCAACACAGATCTAGCTGGTCTTGT AGATTAATCCAGCAATTTTAATTGTTCATGGATAATAATAGAAACTGTTAGGAGTATGGTAGTTGAGTACATGTTTGCTC ATCCATTGCTGCTATCTATTGAAATCCTAACTTAATTACTTCAAAAAAGAGCCTTGGCCAAGATAAAAGAGCCCGCTTCA TGTAATTGGTATGAGGGATCTTCAATTTAGATTAGAGTTATAAAATAACCAATATCAGAAGGTGCGCATTCACAGCTCAC ACAACTTTAGAATGACCATTACATCTAATTACGGCATACTTAAACTTATGAACATGTGGAAGAGACTTAAGGATTTACAT ATCAGATCAATATAATTTAAGCTCTCTTACTTCTCAGGAGCTTGAAGATTTGAGAACCTTATATAACACTGATGATAAAG CTTCTCATACCATCTAGCTAATCTTAATACCAAAAACAGATATCACCATCATTAGGATCATGAAGTTGTTTGCAGTAGCT TGGTTTGTGGTTTTCATGATTTCATTTGAACATGGGAGTAATGTGCAAGGTAGCACTCGCCCTTCAATTCTCAGGATTTC TCAGGGGGTCCAGTCATCTCAAATTCAATATGTGACTGTTACAGGTAATGCAGTGAAAATAATACAAGGTTGGCCATTTA TGTAGCTTGTAAACCACATTCTTTCATGTTTTTCTGTTTGGAAACTGTTAATAACAGTTTAACCTGTCATTAAGATGAAA ATTGCATTATCCAAAAAGCCTTACAAGGTAGACTAATGATGTTTCTACAGGATGCAACAATGACTGCGACACTGCATGTT GTGACTGTGACATCAGGAAACAGCCGCCACTTTGTGTTCTATGCTGTCAAGAAGATCCTTAAGAGGCACAACTATAGTTC GCAATGAGTAACAGGAAACCCCATTGTAACATGCTAAAGTTAGTTGAGGAAATTTTATTTTTCATTACATATTCAATTCA TTTAAAACTTGC
CDS sequence (LotjaGi1g1v0617600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGTTGATGCTGAAGAAAGCGTTGTCTAAGGTTCCTCCCTCACCGGCATCATCACCGCCGTGGAGGCTCGCTCT CCTCCGTGCCCACGCGTCGGAGACCCAAGCCCAGATGGTGGAACCCAAAGCCCGAGAAACAACCCGGATGAAGAAGTTCC AAATCTACCGATGGAACCCTGAGAATCCGACGAAGCCGGAGCTGAAGGAATACACCATCAACCTCAAGGATTGCGGCCCT ATGGTCCTCGACGCTCTCATCAAGATCAAGAATGAGGTCGATCAGACCCTCACCTTCCGCCGTTCCTGCAGGGAAGGCAT CTGTGGCTCATGCGCGATGAACATCGACGGTTGCAACGGGCTTGCTTGCCTGACGGAGATTCCGTCGGAGGCGAAGGAGA CGACGGTGACGCCGCTGCCTCATATGTTTGTGATTAAGGATTTGGTGGTGGATATGACGAATTTCTATCAGCAGTATAAG AGTATTGAGCCGTGGTTGAAGAGGAAGAGTCCGCCGCCTGTTCCAGGGAAGGAGATTCTGCAGAGCAAGAAGGATCGGGA AAAGTTGGATGGGATGTATGAGTGTATTCTGTGCGCTTGTTGCAGTACTTCTTGCCCTAGTTATTGGTGGAACCCTGAAT CTTATCTTGGTCCTGCTGCTTTGCTCCACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGTACACAAAGGAGAGGCTG GAGGCCATTAACGATGAATTCAAGCTCTATCGCTGCCACAGCATATTGAACTGTGCCGATGCCTGCCCTAAGTTGTTGAA CCCTGGGAAGCAAATCCAACAGATCAAGTCAGCTCAGCCAAAAGCTTGA
Protein sequence (LotjaGi1g1v0617600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLMLKKALSKVPPSPASSPPWRLALLRAHASETQAQMVEPKARETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGP MVLDALIKIKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDLVVDMTNFYQQYK SIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERL EAINDEFKLYRCHSILNCADACPKLLNPGKQIQQIKSAQPKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 26 | 279 | 254 | 1.0E-151 | – | |
| PANTHER | 26 | 279 | 254 | 1.0E-151 | – | |
| Gene3D | 41 | 151 | 111 | 4.4E-45 | ||
| SUPERFAMILY | 49 | 151 | 103 | 4.3E-31 | ||
| Pfam | 52 | 156 | 105 | 1.4E-32 | ||
| TIGRFAM | 55 | 276 | 222 | 2.1E-82 | ||
| ProSiteProfiles | 64 | 142 | 79 | 9.404 | ||
| CDD | 66 | 116 | 51 | 0.00219007 | ||
| ProSitePatterns | 103 | 111 | 9 | - | ||
| SUPERFAMILY | 152 | 277 | 126 | 1.64E-35 | ||
| Gene3D | 152 | 282 | 131 | 6.9E-57 | ||
| ProSiteProfiles | 185 | 215 | 31 | 7.76 | ||
| Pfam | 194 | 263 | 70 | 5.3E-8 | ||
| ProSitePatterns | 195 | 206 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Molecular function | 2 iron, 2 sulfur cluster binding | Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0617600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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