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LotjaGi1g1v0122700.1

Overview

Field Value
Gene ID LotjaGi1g1v0122700
Transcript ID LotjaGi1g1v0122700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Josephin-like protein; TAIR: AT2G29640.1 JOSEPHIN-like protein; Swiss-Prot: sp|O82391|JOSL_ARATH Josephin-like protein; TrEMBL-Plants: tr|A0A151U0W8|A0A151U0W8_CAJCA Josephin-like protein; Found in the gene: LotjaGi1g1v0122700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:19465650..19467863) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATTCAAAATTATTTTACTAAAATTTGATATATAAAAAAAAACCTCAAAATCTTTTCACATATGCACAATCTGCAAA TTCAGAACCTGCTTTCCTTCTTCTTCATCGAATTTGAAGCAACTACCACCTTCAATGGCAACTGGGAATTCCCATGTCTA TCACGAAAGGCAAAGGTTGCAGTTCTGTCTCCTGCACTCTCTCAACTCTCTCTTTCAGGTACTTCTTCTTCTTCTTCTTC TCTCCACACCCTTTTCATTTCATCATTTTTCAATTTCAAGTTTTCAACCCAATCCCTCAGATACCCATCTCTGAATTCCT AAAGAAATGATGATTTTTGCTTCCAAGTTCGTTTCTTTTTCCATAATCTGGTTGATTCATGCTTTTTCCTGCTTCTGGGT ATGTTTGTTTTCTCTCCAATCAGCAAAAGGATGCTTTTACTCGAACAACATTGAATGCAATTTCTGAAAGACTTGCACTT GATGAGTCCAGCAATGAAACCTGGACACCACTACCTTTCCTTTTCAAACCCCATCACAATGCATTGACTGGAAACTATGA TATCAATGTTCTCATTGCGGCTTTGGAAGAGAAAGGGAAGAGTGTGGTTTGGCATGATCGTCGAAACGGGGCGTCGTCGA TTGATCTCGATGCGCCTGAAGATGTTTTGATGGGGATTGTGATCAATGTTTTGGTGACTAGGTTTGCTGGGATTTGGAAA GGTAGGCATTGGATCACATTGAGGAAGATTGATGGGGTTTGGTATAACTTGGATAGTGACCTTGCTGCTCCTAAAGCTTT CTGTGATAAGGAGAAAGTAAGGGAATTCTTGGATTTTACTATTGCTCATGGTGGGGAGGTTTTGCTTGTCATGAATGAGA AACATTCTTGAAGTATTTATTAGATGTTTAACTCTGGGTCTGAGCATTTGGGTCAAATTTTGTGCATGTTGATGTATAGT ACAAGGTTGATGGCATTCCAATGGAGCATTTGGGTCTGATGAATCTTTGTGAATTCAGTTTGTGAATGACAGTAAAATGG TTGCTTCTGGAGGATGTTCATGACCATGAATTGTGTGTCTTGGATCAGTACTGCACCTTTGAACTAGTATGTGCCCTGAA ATTTGATTAAGAATGGAGTTAGAAGTGAGGGTATATAGTCATTTAGGACAGGTTTAGATATACTCTTGTCACAGTTTTCT CAGGGGAACCATTGCTTGTCTTACGGGCTAAGGTTTCTTGTTGAGTTTTTGAATTTCTGGGAGGGAATTAAATGTTTTGT CTTTCTTTAACTGTTGTGAATGCAAACTTTACTATTACAAACCTATTGTATAAATCAGCATACTATCTTGGAAACTGACT GTAGACATTCATTGTATTCTGAATCATGTTGTTTTCTGAATGAAAGATGTATCTTTATCTTTACTCAATTTCATAAAGCT GCAGATCTCCTTGTTTTGTATCATTTCCTCATTGAAGTTGTAAGAAGCTAGTTTTTTGTTTTGTTATTTATGTTCTCATT TATAAGTCATGTAGACTGCAACTATTAGAGTGGATGAGTGAAGATCCTCTGTGATCTTATAGTTTCATGCTTTGGAGACC ACCTAATGTGGTTGTATATGTAACTATGTGCTTGTTTTGTTTTCACTTAGGAAGTCCGTTTGAAACATTGGAATTCGAGA TCACGATTTCCAATGCACATTTAGCCAACGGAATGCACTTGTTGCGTTGAGTGAATGTGCTTTCACATTCACCCAACTGA AAACCAAACAGGCTCATAATATCCTCTGGTATTGATTGTCACATGATTTTGATAACAAATGAAAGCAAGTCCCTATTTCT TGTCCCTTGCTCACCAGCCCCACCAGATATGACTTGTAGTTACTCACCTTTAGCAAATAGCCCTTTGGGTTATGCATGGG ACTGATAGGAGAAAAGAAAATTCATCATTCATAGAGATGATTATGTTGTATGAATTTATTTTATCTCACTCATTCTTGGC CTCCTATTGTTCAATTCTAATTGATACAATAGACTACTTATGATGTTAGAAATTGTCTAGTCTGGCTCACCACACCATGA GGGTTAGTCTCAACTCTCATGGGGGTGTTTTTACTTTTATTTACAAGATCATGAGGTAAATATCATAATGATGTATTGAT GTTCTCATTTTGTAAGCAGTAGCTGCTAAAATTTTAAAGTCCCAATTATCAAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0122700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACTGGGAATTCCCATGTCTATCACGAAAGGCAAAGGTTGCAGTTCTGTCTCCTGCACTCTCTCAACTCTCTCTT TCAGCAAAAGGATGCTTTTACTCGAACAACATTGAATGCAATTTCTGAAAGACTTGCACTTGATGAGTCCAGCAATGAAA CCTGGACACCACTACCTTTCCTTTTCAAACCCCATCACAATGCATTGACTGGAAACTATGATATCAATGTTCTCATTGCG GCTTTGGAAGAGAAAGGGAAGAGTGTGGTTTGGCATGATCGTCGAAACGGGGCGTCGTCGATTGATCTCGATGCGCCTGA AGATGTTTTGATGGGGATTGTGATCAATGTTTTGGTGACTAGGTTTGCTGGGATTTGGAAAGGTAGGCATTGGATCACAT TGAGGAAGATTGATGGGGTTTGGTATAACTTGGATAGTGACCTTGCTGCTCCTAAAGCTTTCTGTGATAAGGAGAAAGTA AGGGAATTCTTGGATTTTACTATTGCTCATGGTGGGGAGGTTTTGCTTGTCATGAATGAGAAACATTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0122700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATGNSHVYHERQRLQFCLLHSLNSLFQQKDAFTRTTLNAISERLALDESSNETWTPLPFLFKPHHNALTGNYDINVLIA ALEEKGKSVVWHDRRNGASSIDLDAPEDVLMGIVINVLVTRFAGIWKGRHWITLRKIDGVWYNLDSDLAAPKAFCDKEKV REFLDFTIAHGGEVLLVMNEKHS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13291:SF0
2 182 181 9.7E-79 –
PANTHER
PTHR13291
2 182 181 9.7E-79
IPR040053
ProSiteProfiles
PS50957
5 183 179 47.65
IPR006155
SMART
SM01246
12 180 169 4.5E-62
IPR006155
Pfam
PF02099
13 178 166 9.4E-38
IPR006155
Gene3D
G3DSA:3.90.70.40
18 178 161 1.4E-16 –
Gene3D
G3DSA:1.10.287.10
32 70 39 1.4E-16 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004843
Molecular function Thiol-dependent ubiquitin-specific protease activity Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0122700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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