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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0122700 |
| Transcript ID | LotjaGi1g1v0122700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Josephin-like protein; TAIR: AT2G29640.1 JOSEPHIN-like protein; Swiss-Prot: sp|O82391|JOSL_ARATH Josephin-like protein; TrEMBL-Plants: tr|A0A151U0W8|A0A151U0W8_CAJCA Josephin-like protein; Found in the gene: LotjaGi1g1v0122700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19466347..19467908) extracted from Lotus japonicus Gifu genome v1.2.
AAGACTGATTCATATCAAATATATATTTCTGTACTTTTTACTACTAAAAATTCAAAATTATTTTACTAAAATTTGATATA TAAAAAAAAACCTCAAAATCTTTTCACATATGCACAATCTGCAAATTCAGAACCTGCTTTCCTTCTTCTTCATCGAATTT GAAGCAACTACCACCTTCAATGGCAACTGGGAATTCCCATGTCTATCACGAAAGGCAAAGGTTGCAGTTCTGTCTCCTGC ACTCTCTCAACTCTCTCTTTCAGGTACTTCTTCTTCTTCTTCTTCTCTCCACACCCTTTTCATTTCATCATTTTTCAATT TCAAGTTTTCAACCCAATCCCTCAGATACCCATCTCTGAATTCCTAAAGAAATGATGATTTTTGCTTCCAAGTTCGTTTC TTTTTCCATAATCTGGTTGATTCATGCTTTTTCCTGCTTCTGGGTATGTTTGTTTTCTCTCCAATCAGCAAAAGGATGCT TTTACTCGAACAACATTGAATGCAATTTCTGAAAGACTTGCACTTGATGAGTCCAGCAATGAAACCTGGACACCACTACC TTTCCTTTTCAAACCCCATCACAATGCATTGACTGGAAACTATGATATCAATGTTCTCATTGCGGCTTTGGAAGAGAAAG GGAAGAGTGTGGTTTGGCATGATCGTCGAAACGGGGCGTCGTCGATTGATCTCGATGCGCCTGAAGATGTTTTGATGGGG ATTGTGATCAATGTTTTGGTGACTAGGTTTGCTGGGATTTGGAAAGGTAGGCATTGGATCACATTGAGGAAGATTGATGG GGTTTGGTATAACTTGGATAGTGACCTTGCTGCTCCTAAAGCTTTCTGTGATAAGGAGAAAGTAAGGGAATTCTTGGATT TTACTATTGCTCATGGTGGGGAGGTTTTGCTTGTCATGAATGAGAAACATTCTTGAAGTATTTATTAGATGTTTAACTCT GGGTCTGAGCATTTGGGTCAAATTTTGTGCATGTTGATGTATAGTACAAGGTTGATGGCATTCCAATGGAGCATTTGGGT CTGATGAATCTTTGTGAATTCAGTTTGTGAATGACAGTAAAATGGTTGCTTCTGGAGGATGTTCATGACCATGAATTGTG TGTCTTGGATCAGTACTGCACCTTTGAACTAGTATGTGCCCTGAAATTTGATTAAGAATGGAGTTAGAAGTGAGGGTATA TAGTCATTTAGGACAGGTTTAGATATACTCTTGTCACAGTTTTCTCAGGGGAACCATTGCTTGTCTTACGGGCTAAGGTT TCTTGTTGAGTTTTTGAATTTCTGGGAGGGAATTAAATGTTTTGTCTTTCTTTAACTGTTGTGAATGCAAACTTTACTAT TACAAACCTATTGTATAAATCAGCATACTATCTTGGAAACTGACTGTAGACATTCATTGTATTCTGAATCATGTTGTTTT CTGAATGAAAGATGTATCTTTATCTTTACTCAATTTCATAAAGCTGCAGATCTCCTTGTTTTGTATCATTTCCTCATTGA AGTTGTAAGAAGCTAGTTTTTTGTTTTGTTATTTATGTTCTC
CDS sequence (LotjaGi1g1v0122700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTTCCTGCTTCTGGGTATGTTTGTTTTCTCTCCAATCAGCAAAAGGATGCTTTTACTCGAACAACATTGAATGC AATTTCTGAAAGACTTGCACTTGATGAGTCCAGCAATGAAACCTGGACACCACTACCTTTCCTTTTCAAACCCCATCACA ATGCATTGACTGGAAACTATGATATCAATGTTCTCATTGCGGCTTTGGAAGAGAAAGGGAAGAGTGTGGTTTGGCATGAT CGTCGAAACGGGGCGTCGTCGATTGATCTCGATGCGCCTGAAGATGTTTTGATGGGGATTGTGATCAATGTTTTGGTGAC TAGGTTTGCTGGGATTTGGAAAGGTAGGCATTGGATCACATTGAGGAAGATTGATGGGGTTTGGTATAACTTGGATAGTG ACCTTGCTGCTCCTAAAGCTTTCTGTGATAAGGAGAAAGTAAGGGAATTCTTGGATTTTACTATTGCTCATGGTGGGGAG GTTTTGCTTGTCATGAATGAGAAACATTCTTGA
Protein sequence (LotjaGi1g1v0122700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFPASGYVCFLSNQQKDAFTRTTLNAISERLALDESSNETWTPLPFLFKPHHNALTGNYDINVLIAALEEKGKSVVWHD RRNGASSIDLDAPEDVLMGIVINVLVTRFAGIWKGRHWITLRKIDGVWYNLDSDLAAPKAFCDKEKVREFLDFTIAHGGE VLLVMNEKHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 170 | 170 | 34.18 | ||
| PANTHER | 15 | 169 | 155 | 5.0E-62 | – | |
| PANTHER | 15 | 169 | 155 | 5.0E-62 | ||
| Gene3D | 16 | 165 | 150 | 1.1E-12 | – | |
| SMART | 16 | 167 | 152 | 9.4E-43 | ||
| Pfam | 16 | 165 | 150 | 1.8E-30 | ||
| Gene3D | 19 | 57 | 39 | 1.1E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thiol-dependent ubiquitin-specific protease activity | Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. |
Expression pattern of LotjaGi1g1v0122700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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