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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006861
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.835s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2923020.1
n.a. PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cicer arietinum] gi|502173509|ref|XP_004515346.1| chr1 32879588 32883838 -
3 domain predictions
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Lj2g3v2748810.1
n.a. PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cicer arietinum] gi|502173509|ref|XP_004515346.1| chr2 36417820 36418122 -
2 domain predictions
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Lj3g3v2517540.1
n.a. PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cicer arietinum] gi|502173509|ref|XP_004515346.1| chr3 30809392 30813129 +
2 domain predictions
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LotjaGi1g1v0495200.1
n.a. RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|I3STC5|I3STC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0495200 LjG1.1_chr1 100939743 100945388 -
3 domain predictions
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LotjaGi2g1v0330700_LC.1
n.a. RNA binding protein; TAIR: AT5G47210.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|Q9LVT8|RGGC_ARATH RGG repeats nuclear RNA binding protein C; TrEMBL-Plants: tr|A0A1J7HKP6|A0A1J7HKP6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330700_LC LjG1.1_chr2 80630886 80635858 -
2 domain predictions
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LotjaGi2g1v0330700_LC.2
n.a. RNA binding protein, putative; TAIR: AT4G16830.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23523|RGGA_ARATH RGG repeats nuclear RNA binding protein A; TrEMBL-Plants: tr|Q2PEQ5|Q2PEQ5_TRIPR Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0330700_LC LjG1.1_chr2 80631231 80634829 -
3 domain predictions
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LotjaGi2g1v0330700_LC.3
n.a. RNA binding protein; TAIR: AT5G47210.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|Q9LVT8|RGGC_ARATH RGG repeats nuclear RNA binding protein C; TrEMBL-Plants: tr|A0A1J7HKP6|A0A1J7HKP6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330700_LC LjG1.1_chr2 80631231 80636347 -
2 domain predictions
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LotjaGi3g1v0067700.1
n.a. RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|A0A1J7GE57|A0A1J7GE57_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0067700 LjG1.1_chr3 7392027 7396883 +
3 domain predictions
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LotjaGi3g1v0403600_LC.1
n.a. RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|A0A1J7H3A4|A0A1J7H3A4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0403600_LC LjG1.1_chr3 80640281 80645472 +
2 domain predictions
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LotjaGi3g1v0403600_LC.2
n.a. RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|Q2PEQ5|Q2PEQ5_TRIPR Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0403600_LC LjG1.1_chr3 80640281 80645472 +
2 domain predictions
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LotjaGi3g1v0403600_LC.3
n.a. RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|A0A1J7H3A4|A0A1J7H3A4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0403600_LC LjG1.1_chr3 80640541 80645412 +
2 domain predictions
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LotjaGi3g1v0403600_LC.6
n.a. RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|A0A1J7H3A4|A0A1J7H3A4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0403600_LC LjG1.1_chr3 80641726 80645472 +
2 domain predictions
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LotjaGi5g1v0009500_LC.1
n.a. RNA binding protein, putative; TAIR: AT4G16830.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23523|RGGA_ARATH RGG repeats nuclear RNA binding protein A; TrEMBL-Plants: tr|Q2PEQ5|Q2PEQ5_TRIPR Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0009500_LC LjG1.1_chr5 2000476 2001259 -
2 domain predictions
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