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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0495200 |
| Transcript ID | LotjaGi1g1v0495200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|I3STC5|I3STC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0495200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100939743..100945388) extracted from Lotus japonicus Gifu genome v1.2.
AACACCAAAACACACACATACCCCCCAAATAAATCCATCGTTTAAGATTAGGTTGGGCCTTCATTCTCTTTTCACACAGT CTCTCTCACTCTCTCTCTCTCTCACTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCCTATTGCGGCTAGGGTTTTTCCCC ATTTCTCTCTCTCTCAAACCCTTCTCTCTGATCTGTTTCTACGTTTCGATAATGGAAACGTTGTTAGCTTGATTGATTGT GGAGGTTTTGTGTTGAGGAACCGGGGTTTTTTGGCTTGCTTTTGCTGTTGTTGTTGTTTTCTCGAAAGATGGCGACCATG AACCCTTTTGATTTGTTGGGTGATGACGCTGAGGATCCTTCTCAGCTCATCGCTGCCGAACAGCTCAAGGCTGCGGCCGC GGCGGCGACTGCTCCTCCCAAGAAAGCGGCGGGGGCTCAGGACCAGGGCAAGCAGGCCAAACCGGCTCAGTTGCCTTCCA AGCCACTTCCTCCTGCTCAGGCTGGTCAGATTCCGATGTTTTCTTGGAGTCACTGTTTCACTTTTTGTGGATTTTGATGT TTTTTGTTTTTTTTTGTCGGTTTGTGTTGATGGGGTTTATGTTAATATGAATTTAGTTTATTTAATTGATTTGGTACTTT TTTTTGAAGAATCTGGCTTTTTTTTTATTGCACGGTATCTATTGATGTTGTGTGTTCTTTTAGTGGTTTTTGGATTGATG GGTTTGTTTAATGTATATTTTGTTGTTGTTTTAGTATATAGGTGATATAGGTGATTATTTCTAAAAGCTTATATGTTCTG TGTCTACCTATGCAGTTGATTATTCATGATTGATTATTGTCTGTGTGTTGGATACATTTGTACAATGTTAATATTGTATT TTTATCTATGGTTTGTTTGAAGTGTTCCTGTCTTGGATGCTAGGAAATAATAGTTTGTGACGAGATGACAGTAAGTTTTC TTGTAAGCGGTAATTTGAAAGAAGTTAAGTTATATTACTAAACATATTATGCCTCGAGTTACTTCAAATGCTTGCATTAA CAGTGCATTTTATTATTAGTGTTTTCTTTTCACTTATAGTTTGTGTCTGTCTTAAACCGAATTGTCTTAAACAGAATTGA AGATTGATTTTCTCTCTAGCGGATTTATATTTTTGCAATCCTAATTAATGAATCCTGATCATATTCTATGTTAATGTTTT TCTGATTCTTTCTTATTGATAGTGAGGGATGCCAGAAATGAACCATCACGAGGAGGCCGTGGAGGTGCAAGAGGTGCTGG TCGTGGATTTGGACGTGGTCGTGGTTTCAATCGTGACTTCTCCAATGATGAGAACTCATTCCCTGCCTCTGGAGCCCCTG ATAATCTGGGTCCTTTTGAAGGTGATTCTGAGAAGGCTTCAGAAAGGCGTGGTTATGGTGCACCACGAGGTCCTTATCGT GGTGGTGGTGGTGGTCGACGTGGAGGCTTCAGCAATGGTGAAGCTGATGAAGAAGGACGACCTCGAAGAGCATTTGAACG CCACAGTGGAACTGGCCGAGGGTGATGTTATCACCAATAATGATCTATTTCTTGTACTTATTTTTTTCTCAATATTGATG TCCCTTGCTCTATTTGCAGAAGTGGATTCAAACGTGAAGGCGCTGGACGTGGTAACTGGGGAACACAAAGTGATGAAATT GCTCAGTAAGCATACTTCATACAATATAGTGCTTCTGTAAATTTTGCAGTAATAATGCTTGCCTGGTTTGAGATGAAATT ATTCGTTTTTAATTATTGCTACAATTTCTATTTCCATAATTTAATTAGGGTGACTGATGAAGTGGCGAATGAAACTGAAA AAAATTTGAGCGATGAGAAGCCTGCTGTTGAAGATGTTGCTGATGGAAACAAGGAGAGTTCTGCCAATGAAAATGAAGAA AAAGAGCCTGAGGATAAGGTGACTGTTCAGTCTATTTATAGCTTTTACAAATTAAACCTGAACTGTTGCTGCATCCTCAA AGTTTTTGCAATTTGATGATTAATATTCCAACAGTAGATGTATCTTACGTACAACTGATATTATTGTTAACTCCAGCTTG GATTATCTGCCTAGTGCATCCCTGCAAATTGTTTGGACTGATTTATTTTTTTGTTTTTTATTACTCTATTTAATTTTTCC TATATGCAGTTTTAGAATTTGAGCTTCATGACACTTACGCTTGTTCTCTATTGAGACAGTCTTCGTTTGTATCTTTACCT TGATGATGAGTTTGTTTTTTCCAAGAGTAGTTTACCTTTTATAAGTTTCTGAAAGTGCTAATTTGTATTTACAATGAGTA AGCAGTTCATAGCAATGGCATCTTCACTAATTCATACTTGGCCAATGTAGCTATTTGTAGGTGTTTGATCCCTCGTTTCC CTGATCTCATTCGGTTCTATAGGATGTCTTAGGATCTATGGAAGTTATGTATTTTTTATCTTTTGATTAGAAATGTCAAC AATATTATAATATATTCTTGATGATGACGAGTTATGGATTTGTTATCACTTGCTTTCTGCTTTCTGTGGATCCCTTACTT CAGAGGATCCAATCAGTCTTAATTTTATACTTTGTGATTTTGGTGTTTTATATTTGAATTTTATTAATCAGTAGGCTGTT CTGTTGTTCATTTGTTAGGAGATGACTCTGGAGGAATATGAAAAGGTGCTGGAAGAAAAAAGGAAGGCCTTGCAAGCTCA AAAGACTGAAGGGAGAAAGGTAGACATAAAAGAGTTCGAGTCCATGCAACCCTTATCCTGCAAGAAAGACAATAATGACA TCTTCGCTAAATTGGTGAGAACTTTTTATTCTCTTTTTCGCTTCTATGTACTAATTGTTTATATTATGTTGACAATACCT ACTAATCGGTTGTACCACATTATCTCATGTTACGCTTTTATCCTTCTTTTAGGGATCTGATAAGGATAAACGCAAAGAGG CTTTTGAGAAGGAAGAGAAGGCCAAGAAGGTCTCACTTCTTGAATTTGCTTTCCTAGTTACTATGCAGTTGTCACTCCAT GATTTGCTATTTTCTTCTACTCATTTAAAATAAGTTACAAACTTGCAACATTGATTTTGAAATATCATTTGCTTCTAGCC TAAATTTTTATTTTTACTGTTTTTGGCTAGCCTAATCTCCTTGATGTGACAAGCTTTTTATTCATTTATGCTTGGTTGGT CTCCATGATTTTAGTTGCTTGTTGGGATTATTATTTTGACTTGTCGCATTTTATTCAGTAGAGTTTTGATGATAGTGGGA ATCTTGTGCCAATAATCCAAGTTCACATCTCTTTTATACTTTTTTCTTAATTCAACCATGTTTGTTTATGAAACAAGCAC ATCAGGACTTGTATTGACATCAAGTTTGTAAAATATTGTGAAGGTTCTAGAAAATGCCTCACTATGAATATTGTGAAGGT TATAGAAAATGCCTCACTATGAATATATCTAGCTTGTGTTGACATCATTTGTTTATTCGTAATCTGTCAATTACTATATT TTAACCTTCTTTTAAAATGAAATGGAATGAAACTTGAGTTTTCTTTTTATATTCAGATAGAGAATTGCATTTTAGCATTT GCTGAGTCTTCTAATGTTGTTACCTAAGGTTGTTGTAATCTATTCCCAACATGATTATCTGGACTATTTTTAATGGGGAT AGAAAAAGATTATAATAAAGGTCTGAAAATATCAGAATATCTTTGTTTTTATATCATTATGCCCTGCTAGTATTGTTAGT TTTGTCCATACATTCTCATGTTACAGTTCAATTGGCAGTTTTTGATTGCCAAGTTGTTTACCATCTCTTGTTCATACCTT TTAGAACGACATTAATCAATTTACTACTATGTTTATGGTGTCTTTGTTTGTTTTGTGAACTGCTAATTTTCTCTAGTTTG AGTGACTAATTTTGTTTCATTGGATTTATTGTTCTTAGTCTGTGAGCATCAATGAGTTTCTGAAGCCTGCTGAAGGGGAA ACCTACTATCCCAGTGGACGCGGAAGGGGTCGTGGCCGTGGCTCACGAGGAGGAGGAGGAGGAAGTTTCCGTGGAAATGC TACCAGCAATGCACCTGCTCCATCCATTGAAGATCCTGGGCATTTCCCAACCTTAGGTGGCAAGTGAGATTTTCAAGGAC CCTTCTGACATTTCCCTGTCCTATTCAGTTTTGGGTTCTGTGATTTGAACTTTCATAAAAAAAACTATGGTAATTGGATT TTCTGAATTAGAATGGTCTTTTAATTTTATGTCTTAAAATGTAAATTTAGGTTCGTCATACGGTCCTTTATCCCTTGTAA CCTTTTCCCCAGATGCTTTTGCTTTTATTGCTTTTGACATTGTTGGGGGTAATTGGTGGCGGGTAAGACAAATCTTGTTG AGTTTCCTTTTATTCATAGATTGACATCTCAGTTTTGCTTAAAATTTTAGTTTATTATGTTGTGTCGTGGTGCAAGTATT CTCTAATCTATTTGAGGTCTGGTCTCTTGTAATAATGCTGGACCTATCATTTGTTATGTGGAGATATGGAGTTACCTACG AGTGAGTGCTATATTTGCACTATGGGGAAAATGTTGGATGAGTTCAGACTTCAGTTCTGTTGCAGTGGTGAAATATTTTA TTTATTAAAATGTATGTGTCTGCACCTTGTTCCCGTGGTTGGGAACACTGAAGAATACGAAAGCACGTCCACCTCTAAGC TATGCCTCGTAGCTTCATTGATGCGATTCTTGCACGCTTATCTTCATACTTAATTTGGGGCCTCATTTTGGAGCAATCAG CATCAATTTTAAAGTGAAATTTTGTTTTGATGTGGTCTCAAATTGCTTTGAATTCTGAACTGGAGATCATGAGATATTTT GTTTTTAAGGTAGAATATTAGTAGGGGCAAGTTATGAAATTGCAATCGAATCAGCTAGGTGCTTGTTTGGTAAACTGTTC TGTGAACTGGAATTGGAAGAAATTTATGTCCGTAGGCAAACATTGAAAGAATTGAACCCCTATTTTTGAGTGGATGTTGT GATGAGGACAAAGACAGTAAACAAACATGCTCTAAAACTGGATTGGGGAGGATTGAAATAAGCTTTAGTGGGGTTGCTTG CAATGGCTCTTGGGATCTGACCTTGTAGGGCTGAGCATAGGTCACTTTCAGTTTGAGATTTGGTAAGGATTGCTCATTTT CTACTGGTGGTCCACCCATTGGTTTAATTGGCTACTTGGGTGGGTGGATTTGTGTGGGTTGTGCCTTGGATTAGGCAGCA GTAGGATAAGAAAAAACTAGGTGATTCACCGCCATTTGGCCATGATCCTCTTTCACCTTTGTCAATCTAGACATCGTTTA GAAATTTCTGTTGTCAAGCCTCAACACTTGTGCAGCAATTCGTGTCAGTCACTCAAGACCAAGACCATAAATGAGAAGAA AGTTAGATAATTGCACACGTGTTCGAAAACACTGAAGAAGATAGAACGTAAAAGTGAGATGTTCAGTGCATGTTTATCTT TTTGGAACGCGTGGCTATACTGTATGTAACATGGTTTTTTTTTCCCAGGCGGCTATGGATAATGGAAAACAATTCATTTT TTTTCAGGCTATGAAAGGCAAATTCTTTTTCGGGACTACGTAAAAC
CDS sequence (LotjaGi1g1v0495200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCATGAACCCTTTTGATTTGTTGGGTGATGACGCTGAGGATCCTTCTCAGCTCATCGCTGCCGAACAGCTCAA GGCTGCGGCCGCGGCGGCGACTGCTCCTCCCAAGAAAGCGGCGGGGGCTCAGGACCAGGGCAAGCAGGCCAAACCGGCTC AGTTGCCTTCCAAGCCACTTCCTCCTGCTCAGGCTGTGAGGGATGCCAGAAATGAACCATCACGAGGAGGCCGTGGAGGT GCAAGAGGTGCTGGTCGTGGATTTGGACGTGGTCGTGGTTTCAATCGTGACTTCTCCAATGATGAGAACTCATTCCCTGC CTCTGGAGCCCCTGATAATCTGGGTCCTTTTGAAGGTGATTCTGAGAAGGCTTCAGAAAGGCGTGGTTATGGTGCACCAC GAGGTCCTTATCGTGGTGGTGGTGGTGGTCGACGTGGAGGCTTCAGCAATGGTGAAGCTGATGAAGAAGGACGACCTCGA AGAGCATTTGAACGCCACAGTGGAACTGGCCGAGGAAGTGGATTCAAACGTGAAGGCGCTGGACGTGGTAACTGGGGAAC ACAAAGTGATGAAATTGCTCAGGTGACTGATGAAGTGGCGAATGAAACTGAAAAAAATTTGAGCGATGAGAAGCCTGCTG TTGAAGATGTTGCTGATGGAAACAAGGAGAGTTCTGCCAATGAAAATGAAGAAAAAGAGCCTGAGGATAAGGAGATGACT CTGGAGGAATATGAAAAGGTGCTGGAAGAAAAAAGGAAGGCCTTGCAAGCTCAAAAGACTGAAGGGAGAAAGGTAGACAT AAAAGAGTTCGAGTCCATGCAACCCTTATCCTGCAAGAAAGACAATAATGACATCTTCGCTAAATTGGGATCTGATAAGG ATAAACGCAAAGAGGCTTTTGAGAAGGAAGAGAAGGCCAAGAAGTCTGTGAGCATCAATGAGTTTCTGAAGCCTGCTGAA GGGGAAACCTACTATCCCAGTGGACGCGGAAGGGGTCGTGGCCGTGGCTCACGAGGAGGAGGAGGAGGAAGTTTCCGTGG AAATGCTACCAGCAATGCACCTGCTCCATCCATTGAAGATCCTGGGCATTTCCCAACCTTAGGTGGCAAGTGA
Protein sequence (LotjaGi1g1v0495200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATMNPFDLLGDDAEDPSQLIAAEQLKAAAAAATAPPKKAAGAQDQGKQAKPAQLPSKPLPPAQAVRDARNEPSRGGRGG ARGAGRGFGRGRGFNRDFSNDENSFPASGAPDNLGPFEGDSEKASERRGYGAPRGPYRGGGGGRRGGFSNGEADEEGRPR RAFERHSGTGRGSGFKREGAGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVEDVADGNKESSANENEEKEPEDKEMT LEEYEKVLEEKRKALQAQKTEGRKVDIKEFESMQPLSCKKDNNDIFAKLGSDKDKRKEAFEKEEKAKKSVSINEFLKPAE GETYYPSGRGRGRGRGSRGGGGGSFRGNATSNAPAPSIEDPGHFPTLGGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 370 | 370 | 1.0E-185 | ||
| Pfam | 1 | 80 | 80 | 1.8E-20 | ||
| PANTHER | 1 | 370 | 370 | 1.0E-185 | – | |
| MobiDBLite | 27 | 239 | 213 | - | – | |
| MobiDBLite | 149 | 172 | 24 | - | – | |
| SMART | 159 | 266 | 108 | 8.1E-38 | ||
| Pfam | 159 | 265 | 107 | 8.2E-28 | ||
| MobiDBLite | 187 | 201 | 15 | - | – | |
| MobiDBLite | 202 | 239 | 38 | - | – | |
| Coils | 241 | 261 | 21 | - | – | |
| MobiDBLite | 280 | 370 | 91 | - | – | |
| MobiDBLite | 285 | 311 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0495200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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