Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0067700 |
| Transcript ID | LotjaGi3g1v0067700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G17520.1 Hyaluronan / mRNA binding family; Swiss-Prot: sp|O23593|RGGB_ARATH RGG repeats nuclear RNA binding protein B; TrEMBL-Plants: tr|A0A1J7GE57|A0A1J7GE57_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0067700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7392027..7396883) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTATTGCACGAGGTATGGCCAAGCCCGAAAAAAACCAAATAAATTGAGTCTCGTAGAGATTAGGTTGCCGTCACACA CTCTTCACTCTCTTCTCCTCTTCTCTTACTCTTGACGGCTAGGGTTTTTCTCTTCTTCCTCTTCCGATCTGAAACAACAA CAACAACGATGGTGTCATCGTTAAGCTAAGCGTTTCGTTGTTTCTCGTATCAAACAACAACAACAACAACAACGTGCGGT GGTTTGGTTTGGTTTTCTGTGTTTGTGACAAGACGAAATGGCAACCATGAATCCTTTTGATTTGCTCGGTGATGATGCTG AGGACCCGTCGCAGTTGATTGTTGCTGAGCAGCAGAAGGCGGCTGCTGCTGCTGCGGCTGCTGCGGCGGCGCCCAAGAAG GGTCAGGAGCATGGGAAGGCCGGTCCGGCGGCTCAGCAGAACAAGCCGGCCCAGTTGCCTTCCAAGCCGCTTCCTCCCAC TCAGGCTGGTATAGTTTTTCTTCTCTCATCATGAAATTTTTTGATGGGTTTGAGTTTTGAGATTGAAAAAGTGTGTGTGA GGTTTTCCTGTTTTGTTTGTTACTGTACTCTGTTTCCTTGATGTTTGGAATTGTCTGTTTTTTTTTCCTGTGATTTGGGT TTTGTGTGTTTGCTGATTCAATGATTGAAATGCTTTTTATTTTCATTCCTTCATTAATTCACATGGTTGTTTTCTGACTT TTTGATTTTCGGATCTATGAAGCTGTTGATTTTGTCCATGTGTTTCTCAAGGGTTAATGGAGTTTATCTGTTTTCTTTGT TTTATGAAACGTGGCTTTTGGTTTTTGTTTTGTTTGTTTCTATGTTATTATGTCTTGCTTAACTATGTTCCTGAATGTCT GGACCTTTTTTTAATTGTTGGATTTCATGTCTTCACTGATTCATTGGTGGCAAACTGGCAATGCTTATTGGTGTAAATTT TATTTAGTCTATGATACTTTTTGGTTAGTGTATGTTAGATATTATTATGAATCTGAAGCTATGTTGGATGTTCACAAATG CGGCTGAACAAGCTTTCGCTATCGTCAATGTTAATGGTTTTGTTACTAGTTTTAAGTCAAAGGCTTTTAACTGTTAGTTT TCTATGTTCAAAGGCATTAAATGTAAATTGTTTTTTGCTAGGATTACAGTCTGTTTTTGTCAGCTTGTGTCTCTGTTTTC TTATTGAAGATTGAGGATGTGAAGTTCTATGATAGACCTTGCAGTTCAAACACACTTTGAATTATTATTTTCCTTTGGCC TTGTTCCATACTTCCTTTATGCAATGTGGTAGGGTATCACCCGAATAATAAGATGAATTTGTTCCTTGTATATCTATTCT TTGTGTTAGTAGGTTTACATTGGTGTTTTTTTATATCCGCTACCTTCATTCATGAATGGCCATTGTATTGATGATGCTTC TTGTATCAATTTTCTTGTATATTAATATTTTCTTCTTCTCTACTGATAGTGAGGGAGTCCAAGAATGAAGCTTCTCGTGG CGGCCGTGGGGGTGGCCGAGGAGGTGGACGTGGATTTGGACGCGGTGGTCGTGGTGGAAGTGGCTTTGGCCGTGATTTTC CTAATGATGATAACTCATTTCCTTCCTCTGGAGCCCCCATTAATGAAGGTGCTTTTGAAGGAGATACTGGAAACCCCTCA GAAAGACGCGGTTATGGTGCTCCTCGGGCACCTTATCGCGGTGGCGGTGGTGGTGGTCGCCGTGGCGGTTTTAGCAACGG TGAAGCTGGTGAAGATGGACGCCCACGGAGAACATTTGAACGCCACAGTGGGACCGGACGAGGGTAACATCAATTCCTTA TTACAAATAATTTCATTCTTTCAACTTTGTTTCTATCTGTGTTGAGATTGTTTACTTGCAGAGGTGGGTTCAAACGTGAA GGTGCTGGACGTGGTAACTGGGGAACACAGTCTGATGAAATTGCTCAGTAAGCTAATCTGTTTCCATAATTTTAATAGTA ATAATAAAGTTCGGAGCATGATTCCTGTGGCTTTAAATTGTTAGTCAATTGTTTACATGCTCTTTCCTTTTTATATTATA TTTTAGGGTCACTGAGGAAGTGGTGAATGAAGCTGAAAAGAATGTGGGTGATGAGAAGCCTGCAGCTGAGGAACAAGAGG CAGCAGATGGAAACAAGGAAAGCCCTGTTAATGAAAATGAAGAAAAGGAGCCTGAGGATAAGGTTAATAATCTTAAAGCT TTCTCCATTTATCTTGAACCTGCATCTTCTGAATTTCATGCATTTCATTATCCAGAGACTAACAGAAGAGTTGTGTCTTG TGATTGAATGATAAATCATTCAAGTTCAGTTTTGGTTGTAAGTTCATCTTGTGAATTGCATGGGATGCTTTACTAGAAAG AAACTCTTGCTCAGCATTGTTTTCTTGATTATGAATTGATGTTTTCATCCAGTGTTGGCTTACCTTTTGAAAGTGTTAGG GACTTGATCTGCATGCATTATTTTTGCTCATATAGTTTCTGTATTAAGTGTTACATGTTGAATTTATATTCTATTGGCTT CTGTTTGTCCTTCTCTAAATGCAATCTAAACTGTGATAGGAGATGACACTGGAAGAATATGAGAAGGTGCTGGAAGAGAA AAGAAAAGCCCTGCAAGCACTCAAGACTGAAGTGAGAAAGGTGGATGCTAAGGAGTTTGAATCCATGCAGCCACTTTCCC ACAAGAAAGACAATGATGAGATCTTTGCTAAATTGGTAAGAATTTTCTCCCTTACACCATTCTAACTTTTAGTTTATATT ATATTAGTGAACTGATGCCTATAAATATGTCTTTACACCTTACCTTTAATTTCTGTCCAGGGATCTGACAAGGATAAGCG CAGAGATGCTATTGAGAAGGAGAAATCAAAGAAGGTAGGATTTTTTAGCCTTTGGTTCATATTTGGTTACTCTGTATTAA ACTTCACGATGAGCCAGTCTCCTTGTTTATGGTGATTACCTACCTCCAATACTTGTGTTTTGAAAGCTTATCAGTTGATT ATAGTCTAACTTTTGATAACCTACTCACTGAACAACAATTGATTTAATTGAAAACACCAATTTTGGGGTGTAAAATCTTT TAGTATGTTGAAAATGTCATAATTATTGATATTATGGGTTAAAATGAAGTGAGAAATTTTTTGACCAAGTTGTTAAAAGA GACATTAAAATGGGTGTTTTAACTTCCCTTTCCTGTAAGCAAACCTTGCTTTTCCATCTGATGTACAAGTTTCTTGACAT GGACATGTTCTCTATCCTTTTTTATCTCCTTTATCCTAATTTTCTGGGTGATTGTGGAAGATTCTCTTGTGTTTTTAGTG AAGTGTAAAGGAGTTTGAATTCATGCAGGCTGAGCCACTGTCCCTTTTTATCTCCTTGTACTACTGTACAGCTTTACATT TCAATTGATGTTGCCATTCTTTATTGTGTAGCTGTGATACTTTGTTTTTAATTTTGTTATCTTTCTAGATTCCTTAATAA TCACTTAACTCTGTATTTCTGTTACTAGTAGAATTTCTTAGCTACATGCATTTGTATCAATTTTGTTTATCATTCATTCA TAACCAAATGTGAATTCAGCCTTGGTTCCAATCTTTATTCTCTCATTCTTCTTGTATCAGTCTTTACACTTAGCAGCCTC TTTAATTTTCTTTGCTTATTTCCTGCTTTTTTCTCGTAACTAACTTTGATGTATTGGGCTTTATATTCTTAGTCTGTCAG CATCAATGAGTTTTTGAAGCCTGCTGAAGGAGAGAGGTACTACAGCCCAGGTGGCCGCGGTCGTGGACGTGGCAGCCGTG GTGGTTCAAGAGGAGGTTTCAGTGGAAATGCAAGCAACCATGCAGCAGCTCCAGCAATTCAGGATCCATCTCACTTCCCA ACCTTGGGTGGGAAGTGAGAATTTCCAGAACTCTTTTAGACATATCTCTTTCCGTTTCTTTTTTTATTTTTGTTCTTCAA TTTTGGGTTCTCTGATTTGAAACTAAAGCAGGAAAACAACTGTTACTTGGATTTCCTGAATTAGAAGGGTTTTTTAGCTC TCTTTTGTGCTTTAAAATGTATATTTAGGTTGTTCATCACACGGTCCTTATTCCCCTGTAACCTTTTTTCTCTATCGTTA TGTTTTGCTGTTACGTGATTGACATTCTGGGGGACGGGCTGTATGGTGGTGGCGGATAAGACATAAATGTGATCGAGTTT CGTTATTTTTATAGATCCAATTTCCAGTTTTATTTTAATTTATGTCTTATTATACGCGTTATACCCCAGCTCAGGCAAGT TAGTATTGTTTTCTTTATACTCAACGCCAGTCCACAGAAAATAAGCCAGCTGAGTTTGCACTGGTGTTTGTTTGCATTTA TGTTGAACTCAATGCTTTTGTTCATATGGAAAAAATGGTTGGTGATTTTACTACTATATAAGTGTCTGATAGTATTAAAT TTAGTCTGACGACTCAACTGTTAGATGACAACTAAAAACTGTAATTGGTTCCCTTTTTCAATTTTTATATGTACTAATGG CTTTAGAGGTGCAAGCTCTGAAGTTAATACTTCATTATTTTAGTGAAGGCTGTGTTATTTTGTCCTTGTAATATATATAC TACTTGCATTTCAGGTTTTGGATTTTAAGGTGAGGAAAACCGATGAAACATTTTACTTGACTAAAAGTGACCACCTCATA TTTTGTATGGATAAAAAAAAATACATAAGCTTGAAAATCCATGCAAGCATCCTAATTAGCATCCATGTAGAACTATCATA TGATGTGGCACCAGTATGACACTGTTGACTGGGATACCGTTAGCCACCTAAAGCATT
CDS sequence (LotjaGi3g1v0067700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCATGAATCCTTTTGATTTGCTCGGTGATGATGCTGAGGACCCGTCGCAGTTGATTGTTGCTGAGCAGCAGAA GGCGGCTGCTGCTGCTGCGGCTGCTGCGGCGGCGCCCAAGAAGGGTCAGGAGCATGGGAAGGCCGGTCCGGCGGCTCAGC AGAACAAGCCGGCCCAGTTGCCTTCCAAGCCGCTTCCTCCCACTCAGGCTGTGAGGGAGTCCAAGAATGAAGCTTCTCGT GGCGGCCGTGGGGGTGGCCGAGGAGGTGGACGTGGATTTGGACGCGGTGGTCGTGGTGGAAGTGGCTTTGGCCGTGATTT TCCTAATGATGATAACTCATTTCCTTCCTCTGGAGCCCCCATTAATGAAGGTGCTTTTGAAGGAGATACTGGAAACCCCT CAGAAAGACGCGGTTATGGTGCTCCTCGGGCACCTTATCGCGGTGGCGGTGGTGGTGGTCGCCGTGGCGGTTTTAGCAAC GGTGAAGCTGGTGAAGATGGACGCCCACGGAGAACATTTGAACGCCACAGTGGGACCGGACGAGGAGGTGGGTTCAAACG TGAAGGTGCTGGACGTGGTAACTGGGGAACACAGTCTGATGAAATTGCTCAGGTCACTGAGGAAGTGGTGAATGAAGCTG AAAAGAATGTGGGTGATGAGAAGCCTGCAGCTGAGGAACAAGAGGCAGCAGATGGAAACAAGGAAAGCCCTGTTAATGAA AATGAAGAAAAGGAGCCTGAGGATAAGGAGATGACACTGGAAGAATATGAGAAGGTGCTGGAAGAGAAAAGAAAAGCCCT GCAAGCACTCAAGACTGAAGTGAGAAAGGTGGATGCTAAGGAGTTTGAATCCATGCAGCCACTTTCCCACAAGAAAGACA ATGATGAGATCTTTGCTAAATTGGGATCTGACAAGGATAAGCGCAGAGATGCTATTGAGAAGGAGAAATCAAAGAAGTCT GTCAGCATCAATGAGTTTTTGAAGCCTGCTGAAGGAGAGAGGTACTACAGCCCAGGTGGCCGCGGTCGTGGACGTGGCAG CCGTGGTGGTTCAAGAGGAGGTTTCAGTGGAAATGCAAGCAACCATGCAGCAGCTCCAGCAATTCAGGATCCATCTCACT TCCCAACCTTGGGTGGGAAGTGA
Protein sequence (LotjaGi3g1v0067700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATMNPFDLLGDDAEDPSQLIVAEQQKAAAAAAAAAAAPKKGQEHGKAGPAAQQNKPAQLPSKPLPPTQAVRESKNEASR GGRGGGRGGGRGFGRGGRGGSGFGRDFPNDDNSFPSSGAPINEGAFEGDTGNPSERRGYGAPRAPYRGGGGGGRRGGFSN GEAGEDGRPRRTFERHSGTGRGGGFKREGAGRGNWGTQSDEIAQVTEEVVNEAEKNVGDEKPAAEEQEAADGNKESPVNE NEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEVRKVDAKEFESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEKEKSKKS VSINEFLKPAEGERYYSPGGRGRGRGSRGGSRGGFSGNASNHAAAPAIQDPSHFPTLGGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 380 | 380 | 1.0E-182 | ||
| PANTHER | 1 | 380 | 380 | 1.0E-182 | – | |
| Pfam | 1 | 85 | 85 | 1.2E-17 | ||
| MobiDBLite | 27 | 252 | 226 | - | – | |
| MobiDBLite | 164 | 182 | 19 | - | – | |
| SMART | 169 | 278 | 110 | 2.9E-41 | ||
| Pfam | 169 | 276 | 108 | 1.4E-28 | ||
| MobiDBLite | 212 | 252 | 41 | - | – | |
| Coils | 253 | 280 | 28 | - | – | |
| MobiDBLite | 284 | 380 | 97 | - | – | |
| MobiDBLite | 284 | 322 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0067700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…