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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008511
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.898s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0164069.1
n.a. PREDICTED: UPF0496 protein 4-like [Glycine max] gi|356502356|ref|XP_003519985.1| chr0 77603985 77606014 +
2 domain predictions
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Lj0g3v0251379.1
n.a. PREDICTED: protein BPS1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502157077|ref|XP_004510750.1| chr0 130396954 130401113 -
2 domain predictions
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Lj0g3v0251389.1
n.a. PREDICTED: protein BPS1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502157077|ref|XP_004510750.1| chr0 130398150 130401113 -
2 domain predictions
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Lj0g3v0265919.1
n.a. protein ROH1 [Arabidopsis thaliana] gi|15222577|ref|NP_176576.1| chr0 137728959 137729423 -
2 domain predictions
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Lj1g3v1442480.1
n.a. PREDICTED: UPF0496 protein 4-like [Glycine max] gi|356502356|ref|XP_003519985.1| chr1 17342047 17343609 +
2 domain predictions
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Lj1g3v2752330.2
n.a. Protein BPS1 [Medicago truncatula] gi|357507523|ref|XP_003624050.1| chr1 31566100 31568280 -
2 domain predictions
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Lj3g3v3513670.1
n.a. Uncharacterized protein TCM_035619 [Theobroma cacao] gi|508724841|gb|EOY16738.1| chr3 42811977 42813221 -
2 domain predictions
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Lj4g3v0335890.1
n.a. Uncharacterized protein TCM_035619 [Theobroma cacao] gi|508724841|gb|EOY16738.1| chr4 3884252 3886522 -
2 domain predictions
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Lj4g3v2990070.1
n.a. protein ROH1 [Arabidopsis thaliana] gi|15222577|ref|NP_176576.1| chr4 39495073 39496588 +
2 domain predictions
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Lj5g3v1949730.1
n.a. Uncharacterized protein TCM_035619 [Theobroma cacao] gi|508724841|gb|EOY16738.1| chr5 27458544 27461808 -
2 domain predictions
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LotjaGi2g1v0130700.1
n.a. Plant/F1M20-13 protein; TAIR: AT1G18740.1 ROH1, putative (DUF793); Swiss-Prot: sp|A2Z9A6|U496D_ORYSI UPF0496 protein 4; TrEMBL-Plants: tr|A0A0B2NUR5|A0A0B2NUR5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0130700 LjG1.1_chr2 47413181 47415186 -
2 domain predictions
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LotjaGi3g1v0386500.1
n.a. Protein BPS1, chloroplastic; TAIR: AT2G46080.1 BPS1-like protein; Swiss-Prot: sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic; TrEMBL-Plants: tr|A0A072TPQ1|A0A072TPQ1_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi3g1v0386500 LjG1.1_chr3 78218445 78226933 -
2 domain predictions
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LotjaGi3g1v0386500.2
n.a. Protein BPS1, chloroplastic; TAIR: AT2G46080.1 BPS1-like protein; Swiss-Prot: sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic; TrEMBL-Plants: tr|A0A072TPQ1|A0A072TPQ1_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi3g1v0386500 LjG1.1_chr3 78223996 78225066 -
2 domain predictions
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LotjaGi4g1v0029800.1
n.a. Plant/F1M20-13 protein; TAIR: AT1G18740.1 ROH1, putative (DUF793); Swiss-Prot: sp|Q337C0|U496D_ORYSJ UPF0496 protein 4; TrEMBL-Plants: tr|I3SJ65|I3SJ65_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0029800 LjG1.1_chr4 3673432 3676287 -
2 domain predictions
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LotjaGi4g1v0029800.2
n.a. Plant/F1M20-13 protein; TAIR: AT1G18740.1 ROH1, putative (DUF793); Swiss-Prot: sp|Q337C0|U496D_ORYSJ UPF0496 protein 4; TrEMBL-Plants: tr|I3SJ65|I3SJ65_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0029800 LjG1.1_chr4 3674301 3675479 -
2 domain predictions
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LotjaGi4g1v0429900.2
n.a. Plant/F1M20-13 protein; TAIR: AT1G63930.1 from the Czech 'roh' meaning 'corner'; Swiss-Prot: sp|Q337C0|U496D_ORYSJ UPF0496 protein 4; TrEMBL-Plants: tr|A0A072TUL8|A0A072TUL8_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi4g1v0429900 LjG1.1_chr4 80406209 80407405 +
2 domain predictions
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LotjaGi5g1v0290600.1
n.a. Plant/F1M20-13 protein; TAIR: AT1G74450.1 BPS1-like protein (DUF793); Swiss-Prot: sp|Q337C0|U496D_ORYSJ UPF0496 protein 4; TrEMBL-Plants: tr|I1NH25|I1NH25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0290600 LjG1.1_chr5 60702632 60705087 -
2 domain predictions
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