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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0029800 |
| Transcript ID | LotjaGi4g1v0029800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant/F1M20-13 protein; TAIR: AT1G18740.1 ROH1, putative (DUF793); Swiss-Prot: sp|Q337C0|U496D_ORYSJ UPF0496 protein 4; TrEMBL-Plants: tr|I3SJ65|I3SJ65_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0029800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3673432..3676287) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATCTTCCTTCATTCTACATTTTATTTTTAATAATAAAAACCTGAAAAAGAATATTATTGTCTTGTCAGTTGTCTG CAAAACAATATTCCGATTACGTTTTCGCTTCAACTGGCGTGAACCAAAGCCCATTAGGGTTTGGGGATTCGCCATTTCCA ATTTCATCTCCTCTATGATCACCCTCTTACTCCTTCAAATTCCCATGGTCTTGCTTGCTCAGTTCTTCACGTTTCAGCTT CAAAGGTACCTCCTTTATTCTTTGAATTTCTTTTAAGTTTTCTTAGATGCTGTTCTTGCCCTTTCTCTTGTTTTGTTGAA AAGATCATGTTTTTATGAAACCATGCTAGCTTATTGGAGATTTTGAGTATTTGGGTATCTGGGTTTTGGAAAATTCTGAG GTTTTGGCATTGGGTTTGAGATAAAGGTTTGATTTTTATTTGGGGTTTGTTGGATTTTGAGTTTGGTTTTGCATTTTGAA GGTTTGTGAGTCATGTGATTGAAAGTTGAGATCTTTTCTGATTTGGGTTTTGATTCCCATGTTGGAATTTTCCTGATCTA ATTTCTCAGATAGATTTTTTTTTAATGATTTTAAGGCTTTCAATTGGATTTGGATATGGAATGTTAATCTTGTTGTAATG TTATACATGTGTTAAGTTACTTGGATTCAGTTACTAATAGGAAACAAAACTGAAACAGGGATCATCAATGCAGCTGTTTT GGTTGGGTTTCATGTGATTCCTGTGGTTCTGTTCCATTGTAGTGAGGATCTTGAGGAGGCTTTTGCTGAAGGCTGAGAGT CTGTGACGATGCCTTCTACAGCTAATCATGGCCCTTCTTCGTCATTTTCCTCGTTTGGCCGATCCTTATTTGGTGTCAGG CAGGAACAGGTTCATTCTGTGGAAGCAAGCAATGAATCGGATTCCTGTAATTTAGAGCTTGGATCATTCCAAAAACGTGT TGCTGATCGGTTTCATGACCTTTCTGGGGTTAGTGATGATGAATTGCTATCAATTGATTGGATCCAGAAGCTCCTCACTG CATTTATCTGCTGCCAAGAGGAATTCAGAGCCATTTTGTTGAATAACAAAGAACAGGTCTCAAAGACCCCCCTGGATCGT ATGATTTCTGAATTCTTTGACAGGTCAGTGAAGGCACTTGACATTTGCAACGCGAGCCGTGATGGGATTGAGAAGATTCG GATGTGGCAAAAGCATCTGGAAATTGTGATTTGCGCCATGGGTTCAAATAAGAGATCATTGACTGAAGGCCAGTTCCGGA GGGCAAGAAAGGCGCTGATGGATTTAGCATTGGCGATGCTTGATGAGAAAGACTCCGGAGCGGTTCTTTCTCAGCGTCAT AGATCATTCGGGAGGCATAACTCAAGCAAGGATCATCACTCAGCAGCAGGGCATTCAAGATCACATTCATGGAGTGTCTC TCGTTCCTGGTCCGCAGCCAAGCAACTGCAGTCCATTGCAAGTAACCTGGTTCCACCGCGTGCGACTGAGATTGCTGCAA CAAGCAGGCTCGCAATTACTGTTTATACAATGAATTGTATCCTCTTGTTAGTTTTGTGGACCCTTGTTGCAGCAATTCCT TGTCAGGATAGGGGTTTAAACATCCATTTCTCAGTCCCGCGGCAATTCTCCTGGAGCACTCCTGTGACCTCACTTTATGA TCGGATCATGGATGAGTCAAAGAAGCGAGAACGCCGGAACTCAAATGGTTTGTTGAAGGAGATCTATCAGGTTGAGCTAA GCACCCGTCACATGACAGACCTTGTAGATTCAGCTCAGTTTCCTTTGACAGAAGAGCAGAAAATGGAAGTTGAACAGGAT TTGAAGGTGCTGATGGATGTTTGTGAAGCTTTTAGAGGTGGATTGGACCTGTTGGAGCGCCAGGTGAGGGAGGTGTTTCG AAAAATAATGACATGCCGAACTGAGGGGCTTGATTACCTTGGCACTTCAACCCATGCAGAGCAATGAAAATGGTAGATTG ATGCTGAGCTATCAGATGTACAAATTTGCGGAACTTGGAACTTGTACATGTTACATCTTACCAGCTTTTTGAGAGGAGGA AGAATGACTAGGCGAGCTTCGCTGATAAAATCTTTTAGCTCTCTTATTTATAATGAATGCGTTGTATTAATCTCAGTACT TGTGTAAAAAAATACTTGTAAGTTGTATGATCAAAACAAAAGGGGTGGGGGAAAGAGAAGAACTGAACCTTGTGTTGCAG TTTTTCAACCCAATCTGTTTTCCCAGATATTCAGACAACATGCAATAAAAGTTGGGAGAAAGAAGCAAAAAGAGAAATCA ACAGGGATTGAGTGGAAATTAGGCAGTTGATAGAATATCTCTCAACCCGTTTGAAATAATTTATTTTGCTGCATTGTTTT GCTCTTACAATTGCTTTTCCTATTCTATTATTTTATACTGAGGCCAAGTCATAATTATTTGATAAACTTTTTGATCGTTA GTTCATGTGTTTCTTTGCATGCTAAATTTTAGGCTCGCATGTGCATACATTTTTCCAGCTATGACTAGCTCACAGAATCT ATAGCCTCTAATGGAAATGCAAGGCAGCAACCATCTGTAGCAGGCTAGCTCACAGAATCTATATCTGTTTTTGGTAAGGA TCTCTCCCCTGCCTATTTGGAGGGCTGACAGTTGCATGCTTGTCTAGCTCAGCCCCTAATGAGCTTTCTGGTATTCCCAC TTCTGTAAAAAACGACTGATTTGGCTTGCATATCTTGCCGGTGTTATTGGTTTTTCTTTTAACTCACTACAAAAACATTT TTTTTGGCTCTAGTTTTCATTAGAGGCTATGATCACGTTGGGTAAAACCAATTTCT
CDS sequence (LotjaGi4g1v0029800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTACAGCTAATCATGGCCCTTCTTCGTCATTTTCCTCGTTTGGCCGATCCTTATTTGGTGTCAGGCAGGAACA GGTTCATTCTGTGGAAGCAAGCAATGAATCGGATTCCTGTAATTTAGAGCTTGGATCATTCCAAAAACGTGTTGCTGATC GGTTTCATGACCTTTCTGGGGTTAGTGATGATGAATTGCTATCAATTGATTGGATCCAGAAGCTCCTCACTGCATTTATC TGCTGCCAAGAGGAATTCAGAGCCATTTTGTTGAATAACAAAGAACAGGTCTCAAAGACCCCCCTGGATCGTATGATTTC TGAATTCTTTGACAGGTCAGTGAAGGCACTTGACATTTGCAACGCGAGCCGTGATGGGATTGAGAAGATTCGGATGTGGC AAAAGCATCTGGAAATTGTGATTTGCGCCATGGGTTCAAATAAGAGATCATTGACTGAAGGCCAGTTCCGGAGGGCAAGA AAGGCGCTGATGGATTTAGCATTGGCGATGCTTGATGAGAAAGACTCCGGAGCGGTTCTTTCTCAGCGTCATAGATCATT CGGGAGGCATAACTCAAGCAAGGATCATCACTCAGCAGCAGGGCATTCAAGATCACATTCATGGAGTGTCTCTCGTTCCT GGTCCGCAGCCAAGCAACTGCAGTCCATTGCAAGTAACCTGGTTCCACCGCGTGCGACTGAGATTGCTGCAACAAGCAGG CTCGCAATTACTGTTTATACAATGAATTGTATCCTCTTGTTAGTTTTGTGGACCCTTGTTGCAGCAATTCCTTGTCAGGA TAGGGGTTTAAACATCCATTTCTCAGTCCCGCGGCAATTCTCCTGGAGCACTCCTGTGACCTCACTTTATGATCGGATCA TGGATGAGTCAAAGAAGCGAGAACGCCGGAACTCAAATGGTTTGTTGAAGGAGATCTATCAGGTTGAGCTAAGCACCCGT CACATGACAGACCTTGTAGATTCAGCTCAGTTTCCTTTGACAGAAGAGCAGAAAATGGAAGTTGAACAGGATTTGAAGGT GCTGATGGATGTTTGTGAAGCTTTTAGAGGTGGATTGGACCTGTTGGAGCGCCAGGTGAGGGAGGTGTTTCGAAAAATAA TGACATGCCGAACTGAGGGGCTTGATTACCTTGGCACTTCAACCCATGCAGAGCAATGA
Protein sequence (LotjaGi4g1v0029800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSTANHGPSSSFSSFGRSLFGVRQEQVHSVEASNESDSCNLELGSFQKRVADRFHDLSGVSDDELLSIDWIQKLLTAFI CCQEEFRAILLNNKEQVSKTPLDRMISEFFDRSVKALDICNASRDGIEKIRMWQKHLEIVICAMGSNKRSLTEGQFRRAR KALMDLALAMLDEKDSGAVLSQRHRSFGRHNSSKDHHSAAGHSRSHSWSVSRSWSAAKQLQSIASNLVPPRATEIAATSR LAITVYTMNCILLLVLWTLVAAIPCQDRGLNIHFSVPRQFSWSTPVTSLYDRIMDESKKRERRNSNGLLKEIYQVELSTR HMTDLVDSAQFPLTEEQKMEVEQDLKVLMDVCEAFRGGLDLLERQVREVFRKIMTCRTEGLDYLGTSTHAEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 386 | 386 | 1.5E-199 | – | |
| PANTHER | 1 | 386 | 386 | 1.5E-199 | – | |
| Phobius | 1 | 240 | 240 | - | – | |
| Pfam | 9 | 384 | 376 | 2.8E-150 | ||
| Phobius | 241 | 263 | 23 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 264 | 392 | 129 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0029800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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