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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0429900 |
Transcript ID | LotjaGi4g1v0429900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Plant/F1M20-13 protein; TAIR: AT1G63930.1 from the Czech 'roh' meaning 'corner'; Swiss-Prot: sp|Q337C0|U496D_ORYSJ UPF0496 protein 4; TrEMBL-Plants: tr|A0A072TUL8|A0A072TUL8_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi4g1v0429900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80406209..80407405) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGCAACAACAGAGAATAATCAAGGCTCATTCCTGGGCCGAATAAGCATTCGAAGAAACCAAGTCATGTCCATGGA CGGAAGCCACGACCAGGAGCAAGAAGACCTTGAGCTTTTCCAAAAGCACGTCAGCGACCGCTTCGCTGATCTCCTCTCCT CCACCACCGACGACCCTTCTGGCGCCGGTTATTCCCTTCTATCCATCGGCTGGCTCCGCAAGCTCCTGGACGAGCTCCTC TGCTGCGAGGCTGAATTCAAAGCCGTTGTCATGATGGGCCGCGACCCTTCCCAGATCTCTAAGCCACCGCTCGACCGCCT CCTCCCGGAGTTTCTCGACCGTGTCGTCAAGTCCCTTGACGTCTGCAATGCCGTCGCCCTCGGTATCGACTCGCTTCGCA ACCTCCAGCGTCTTGCGGAGATTGCCGTGGCCGCGCTTGAGCCGAGGCCTATGGGCGACGGCCAGGTCCGCCGCGCTAAG AAGGCGCTCAACGCCCTCATCGCCGCGATGATGCACGAGGACAAGGACAGCGGCAACACAAAAGGAACCGAGAGGACCAG GTCCTTCGGAAGAAGAGGCGGCGGTGGAGGAGGGAACAAGGACCAGCGCGCCGGCGGGCCATTCCGGTCACTTTCATGGA GCATGGCGAGGAATTGGTCCTCAGCGAAACAAATCCATGCCATGACCTCTAACCTGGTCGCGCCACGTGGTGCGGAATCA ACCGGGCTGGCCGCACCGGTCTACATCATGAGCACTATTCTGGTGTTCGTGATGTGGACTTTGGTTGCGGCCATTCCGTG TCAAGAGAGGAATGGGCTCGGGACCCATTTTCCTCTCCCGAGGCAATTGGGCTGGGCCCAGCCCATGATTGGGTTGCAGG AGAAGATTGCGGAGGAGTGGAAGAAGAAGGAGAAGAAAGGATTTGTTGGGTTGCTTGAGGAGATGCAGAGGATGGAGAAG CTGGGGCAGTTGCTGATTGAATTTGCTGACTCGTTTCAGTTCCCAGCTGAAACGGAGCGTTTGGAGGAGGTGAAGGGACA CGTGGAGGAGCTAGGGGACATTTGCAGGAAGATGGAGGAAGGGTTGGAACCATTGCAGCAGCAGATTAGAGAGGTGTTTC ACAGGCTTGTCAGGAGCAGAACTGAGTTTCTTCTTGTGTTGGATCAAGGAGGGAAATCTTCAGCACCCACTGTGTAA
CDS sequence (LotjaGi4g1v0429900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGCAACAACAGAGAATAATCAAGGCTCATTCCTGGGCCGAATAAGCATTCGAAGAAACCAAGTCATGTCCATGGA CGGAAGCCACGACCAGGAGCAAGAAGACCTTGAGCTTTTCCAAAAGCACGTCAGCGACCGCTTCGCTGATCTCCTCTCCT CCACCACCGACGACCCTTCTGGCGCCGGTTATTCCCTTCTATCCATCGGCTGGCTCCGCAAGCTCCTGGACGAGCTCCTC TGCTGCGAGGCTGAATTCAAAGCCGTTGTCATGATGGGCCGCGACCCTTCCCAGATCTCTAAGCCACCGCTCGACCGCCT CCTCCCGGAGTTTCTCGACCGTGTCGTCAAGTCCCTTGACGTCTGCAATGCCGTCGCCCTCGGTATCGACTCGCTTCGCA ACCTCCAGCGTCTTGCGGAGATTGCCGTGGCCGCGCTTGAGCCGAGGCCTATGGGCGACGGCCAGGTCCGCCGCGCTAAG AAGGCGCTCAACGCCCTCATCGCCGCGATGATGCACGAGGACAAGGACAGCGGCAACACAAAAGGAACCGAGAGGACCAG GTCCTTCGGAAGAAGAGGCGGCGGTGGAGGAGGGAACAAGGACCAGCGCGCCGGCGGGCCATTCCGGTCACTTTCATGGA GCATGGCGAGGAATTGGTCCTCAGCGAAACAAATCCATGCCATGACCTCTAACCTGGTCGCGCCACGTGGTGCGGAATCA ACCGGGCTGGCCGCACCGGTCTACATCATGAGCACTATTCTGGTGTTCGTGATGTGGACTTTGGTTGCGGCCATTCCGTG TCAAGAGAGGAATGGGCTCGGGACCCATTTTCCTCTCCCGAGGCAATTGGGCTGGGCCCAGCCCATGATTGGGTTGCAGG AGAAGATTGCGGAGGAGTGGAAGAAGAAGGAGAAGAAAGGATTTGTTGGGTTGCTTGAGGAGATGCAGAGGATGGAGAAG CTGGGGCAGTTGCTGATTGAATTTGCTGACTCGTTTCAGTTCCCAGCTGAAACGGAGCGTTTGGAGGAGGTGAAGGGACA CGTGGAGGAGCTAGGGGACATTTGCAGGAAGATGGAGGAAGGGTTGGAACCATTGCAGCAGCAGATTAGAGAGGTGTTTC ACAGGCTTGTCAGGAGCAGAACTGAGTTTCTTCTTGTGTTGGATCAAGGAGGGAAATCTTCAGCACCCACTGTGTAA
Protein sequence (LotjaGi4g1v0429900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPATTENNQGSFLGRISIRRNQVMSMDGSHDQEQEDLELFQKHVSDRFADLLSSTTDDPSGAGYSLLSIGWLRKLLDELL CCEAEFKAVVMMGRDPSQISKPPLDRLLPEFLDRVVKSLDVCNAVALGIDSLRNLQRLAEIAVAALEPRPMGDGQVRRAK KALNALIAAMMHEDKDSGNTKGTERTRSFGRRGGGGGGNKDQRAGGPFRSLSWSMARNWSSAKQIHAMTSNLVAPRGAES TGLAAPVYIMSTILVFVMWTLVAAIPCQERNGLGTHFPLPRQLGWAQPMIGLQEKIAEEWKKKEKKGFVGLLEEMQRMEK LGQLLIEFADSFQFPAETERLEEVKGHVEELGDICRKMEEGLEPLQQQIREVFHRLVRSRTEFLLVLDQGGKSSAPTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 244 | 244 | - | – | |
PANTHER | 1 | 393 | 393 | 1.2E-171 | – | |
PANTHER | 1 | 393 | 393 | 1.2E-171 | – | |
Pfam | 6 | 386 | 381 | 3.8E-158 | ||
MobiDBLite | 175 | 207 | 33 | - | – | |
TMHMM | 243 | 265 | 23 | - | – | |
Phobius | 245 | 265 | 21 | - | – | |
Phobius | 266 | 398 | 133 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0429900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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