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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010108
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.153s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0210279.1
n.a. PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1| chr0 105656332 105658304 -
2 domain predictions
2 GO terms
Lj0g3v0219209.1
n.a. n.a. chr0 111956583 111963390 -
2 domain predictions
2 GO terms
Lj0g3v0231639.1
n.a. PREDICTED: lycopene beta cyclase, chloroplastic-like [Glycine max] gi|356504708|ref|XP_003521137.1| chr0 120146910 120148530 -
2 domain predictions
2 GO terms
Lj3g3v1193490.1
n.a. PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1| chr3 15849837 15851010 +
2 domain predictions
2 GO terms
Lj6g3v1211980.1
n.a. PREDICTED: lycopene epsilon cyclase, chloroplastic-like [Glycine max] gi|356530411|ref|XP_003533775.1| chr6 15080662 15085485 -
2 domain predictions
2 GO terms
LotjaGi1g1v0665500.1
n.a. Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500 LjG1.1_chr1 122741366 122749740 +
2 domain predictions
2 GO terms
LotjaGi1g1v0665500.2
n.a. Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500 LjG1.1_chr1 122741388 122749633 +
2 domain predictions
2 GO terms
LotjaGi1g1v0665500.3
n.a. Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500 LjG1.1_chr1 122741431 122749633 +
2 domain predictions
2 GO terms
LotjaGi1g1v0665500.4
n.a. Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500 LjG1.1_chr1 122741884 122743403 +
2 domain predictions
2 GO terms
LotjaGi3g1v0178200.1
n.a. Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplastic; TrEMBL-Plants: tr|A0A0L9UNF8|A0A0L9UNF8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0178200 LjG1.1_chr3 24766410 24773610 +
2 domain predictions
2 GO terms
LotjaGi6g1v0228800.1
n.a. Lycopene cyclase; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UBL0|A0A0L9UBL0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800 LjG1.1_chr6 53471935 53477801 -
2 domain predictions
2 GO terms
LotjaGi6g1v0228800.2
n.a. Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800 LjG1.1_chr6 53472620 53477909 -
2 domain predictions
2 GO terms
LotjaGi6g1v0228800.3
n.a. Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800 LjG1.1_chr6 53472997 53477611 -
2 domain predictions
2 GO terms
LotjaGi6g1v0228800.4
n.a. Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800 LjG1.1_chr6 53472997 53477611 -
2 domain predictions
2 GO terms