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GO:0016117

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Carotenoid biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
Subterm of

Relationships

The relationship of GO:0016117 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCgo_curators

Associated Lotus transcripts 25

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0055279.1
– PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like isoform X1 [Cicer arietinum] gi|502117333|ref|XP_004495784.1|
GO terms
3
Lj0g3v0087419.1
– PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Cicer arietinum] gi|502135246|ref|XP_004502268.1|
GO terms
2
Lj0g3v0210279.1
– PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1|
GO terms
2
Lj0g3v0219209.1
–
GO terms
2
Lj0g3v0231639.1
– PREDICTED: lycopene beta cyclase, chloroplastic-like [Glycine max] gi|356504708|ref|XP_003521137.1|
GO terms
2
Lj0g3v0245759.1
– PREDICTED: prolycopene isomerase, chloroplastic-like [Cicer arietinum] gi|502122189|ref|XP_004497623.1|
GO terms
2
Lj3g3v1193490.1
– PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1|
GO terms
2
Lj6g3v1211980.1
– PREDICTED: lycopene epsilon cyclase, chloroplastic-like [Glycine max] gi|356530411|ref|XP_003533775.1|
GO terms
2
LotjaGi1g1v0665500.1
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
GO terms
2
LotjaGi1g1v0665500.2
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
GO terms
2
LotjaGi1g1v0665500.3
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
GO terms
2
LotjaGi1g1v0665500.4
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
GO terms
2
LotjaGi3g1v0178200.1
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplastic; TrEMBL-Plants: tr|A0A0L9UNF8|A0A0L9UNF8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0178200
GO terms
2
LotjaGi5g1v0108300.1
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
GO terms
2
LotjaGi5g1v0108300.3
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0R0L5D6|A0A0R0L5D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300
GO terms
2
LotjaGi5g1v0108300.6
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
GO terms
2
LotjaGi5g1v0108300.7
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|I1JGC5|I1JGC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300
GO terms
2
LotjaGi5g1v0108300.8
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
GO terms
2
LotjaGi5g1v0214400.1
– Zeta-carotene desaturase; TAIR: AT3G04870.1 zeta-carotene desaturase; Swiss-Prot: sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic; TrEMBL-Plants: tr|A0A0L9VJ49|A0A0L9VJ49_PHAAN Zeta-carotene desaturase; Found in the gene: LotjaGi5g1v0214400
GO terms
3
LotjaGi6g1v0103000.1
– Phytoene desaturase; TAIR: AT4G14210.1 phytoene desaturase 3; Swiss-Prot: sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic; TrEMBL-Plants: tr|I1MYC3|I1MYC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0103000
GO terms
2
LotjaGi6g1v0103000.2
– Phytoene desaturase; TAIR: AT4G14210.1 phytoene desaturase 3; Swiss-Prot: sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic; TrEMBL-Plants: tr|I1MYC3|I1MYC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0103000
GO terms
2
LotjaGi6g1v0228800.1
– Lycopene cyclase; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UBL0|A0A0L9UBL0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
GO terms
2
LotjaGi6g1v0228800.2
– Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
GO terms
2
LotjaGi6g1v0228800.3
– Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
GO terms
2
LotjaGi6g1v0228800.4
– Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 1 4.00