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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0665500 |
| Transcript ID | LotjaGi1g1v0665500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122741884..122743403) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATCCATTATGGATACTTTGCTCAAAACACCTAACAAGCTTGGATTTTTGCATCCACTTCATGGTTATTCAGAGAAA TTGAACAATTCAGGGTCCTCTAGGTTGGAGTTTAGGTTTGGTTCCAAGAAACCAGTGGTGAAGTGGGGTGGATGTGGTGG TGGTTTGAGGGCTAGTAGCAGTGCCCTTCTAGAGCTTGTTCCAGAGGTCAAGAAGGAGAATCTGGATTTTGAACTTCCTT TGTATGATTCGATGAAGGGAGCTGTTGTCGATCTCGCGGTTGTGGGAGGAGGCCCTGCAGGGCTTGCAGTTGCTCAGCAG GTTTCTGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCAAACCCTAGGTTGATTTGGCCCAATAATTATGGTGTTTGGGT GGATGAATTTGAAGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGTGCTGTTGTCTACATTGATGACAAAA CAAAGAAGTATCTAGATAGACCTTATGGTAGGGTTAATAGGAAGCTGTTGAAGTCAAAGATGCTGCAAAAATGCATTTCA AATGGTGTCAAGTTTCACCAGGCTAAAGTCATCAAGGTTATTCATGAGGAATCGAAGTCCATGTTGATTTGCAATGACGG CGTCACTATTCAGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATCTCTTGTTCAGTATGATAAGCCTTATAATC CAGGTTACCAAGTTGCCTATGGGATTTTAGCTGAGGTTGAGGAGCACCCGTTTGACGTGGATAAAATGCTTTTTATGGAC TGGAGAGACTCACATCTGGACAATAATATGGAGCTGAAGGAGAAGAATAGCAGAATACCCACTTTTTTATATGCAATGCC CTTTTCATCCACCAAGATATTTCTTGAAGAAACCTCTCTTGTTGCACGCCCTGGATTGCGTATGGATGATATACAGGACA GAATGGTTGCTAGGCTAAAACACTTGGGCATTAAAGTGAAGAGCATTGAAGAGGATGAGCACTGTGTCATTCCGATGGGT GGCCCCTTACCGGTTCTCCCGCAAAGAGTTATTGGAATCGGTGGTACTGCCGGGATGGTGCATCCTTCAACTGGGTATAT GGTAGCAAGGACCCTAGCTGCTGCTCCTATTGTTGCTAATGCTATTGTTCAGTACCTTGGTTCTGATAGAGGCATCTCAG GAGATGGATTATCTTCACTAGTGTGGAAAGATTTATGGCCCATCGAAAGGAGGCGGCAGAGGGAGTTCTTCTGTTTCGGT ATGGACATCTTACTCAAGCTTGATTTACCCGGCACGAGGAGATTTTTTGATGCATTTTTTGATCTCGAACCTCATTACTG GCATGGATTCCTATCATCAAGACTGTTTCTTCCAGAGCTGCTAGTTTTTGGTCTCTCTCTATTTTCTTATGCTTCTAATA CTTCTAGGATAGAGATTATGGCGAAGGGAACTGTTCCTTTGGTAAATATGATCAACAACTTGATACAAGATAAAGAATAA
CDS sequence (LotjaGi1g1v0665500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACTTTGCTCAAAACACCTAACAAGCTTGGATTTTTGCATCCACTTCATGGTTATTCAGAGAAATTGAACAATTC AGGGTCCTCTAGGTTGGAGTTTAGGTTTGGTTCCAAGAAACCAGTGGTGAAGTGGGGTGGATGTGGTGGTGGTTTGAGGG CTAGTAGCAGTGCCCTTCTAGAGCTTGTTCCAGAGGTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCG ATGAAGGGAGCTGTTGTCGATCTCGCGGTTGTGGGAGGAGGCCCTGCAGGGCTTGCAGTTGCTCAGCAGGTTTCTGAGGC AGGGCTTTCAGTTTGTGCAATTGACCCAAACCCTAGGTTGATTTGGCCCAATAATTATGGTGTTTGGGTGGATGAATTTG AAGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGTGCTGTTGTCTACATTGATGACAAAACAAAGAAGTAT CTAGATAGACCTTATGGTAGGGTTAATAGGAAGCTGTTGAAGTCAAAGATGCTGCAAAAATGCATTTCAAATGGTGTCAA GTTTCACCAGGCTAAAGTCATCAAGGTTATTCATGAGGAATCGAAGTCCATGTTGATTTGCAATGACGGCGTCACTATTC AGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATCTCTTGTTCAGTATGATAAGCCTTATAATCCAGGTTACCAA GTTGCCTATGGGATTTTAGCTGAGGTTGAGGAGCACCCGTTTGACGTGGATAAAATGCTTTTTATGGACTGGAGAGACTC ACATCTGGACAATAATATGGAGCTGAAGGAGAAGAATAGCAGAATACCCACTTTTTTATATGCAATGCCCTTTTCATCCA CCAAGATATTTCTTGAAGAAACCTCTCTTGTTGCACGCCCTGGATTGCGTATGGATGATATACAGGACAGAATGGTTGCT AGGCTAAAACACTTGGGCATTAAAGTGAAGAGCATTGAAGAGGATGAGCACTGTGTCATTCCGATGGGTGGCCCCTTACC GGTTCTCCCGCAAAGAGTTATTGGAATCGGTGGTACTGCCGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCAAGGA CCCTAGCTGCTGCTCCTATTGTTGCTAATGCTATTGTTCAGTACCTTGGTTCTGATAGAGGCATCTCAGGAGATGGATTA TCTTCACTAGTGTGGAAAGATTTATGGCCCATCGAAAGGAGGCGGCAGAGGGAGTTCTTCTGTTTCGGTATGGACATCTT ACTCAAGCTTGATTTACCCGGCACGAGGAGATTTTTTGATGCATTTTTTGATCTCGAACCTCATTACTGGCATGGATTCC TATCATCAAGACTGTTTCTTCCAGAGCTGCTAGTTTTTGGTCTCTCTCTATTTTCTTATGCTTCTAATACTTCTAGGATA GAGATTATGGCGAAGGGAACTGTTCCTTTGGTAAATATGATCAACAACTTGATACAAGATAAAGAATAA
Protein sequence (LotjaGi1g1v0665500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTLLKTPNKLGFLHPLHGYSEKLNNSGSSRLEFRFGSKKPVVKWGGCGGGLRASSSALLELVPEVKKENLDFELPLYDS MKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDDKTKKY LDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEESKSMLICNDGVTIQATVVLDATGFSRSLVQYDKPYNPGYQ VAYGILAEVEEHPFDVDKMLFMDWRDSHLDNNMELKEKNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQDRMVA RLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGL SSLVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGLSLFSYASNTSRI EIMAKGTVPLVNMINNLIQDKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 501 | 478 | 1.1E-282 | – | |
| PANTHER | 24 | 501 | 478 | 1.1E-282 | – | |
| Gene3D | 81 | 419 | 339 | 1.8E-24 | ||
| SUPERFAMILY | 85 | 469 | 385 | 2.02E-30 | ||
| PRINTS | 87 | 109 | 23 | 4.7E-5 | – | |
| Pfam | 87 | 479 | 393 | 9.4E-145 | – | |
| TIGRFAM | 87 | 482 | 396 | 1.5E-153 | ||
| PRINTS | 218 | 227 | 10 | 4.7E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carotenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. |
Expression pattern of LotjaGi1g1v0665500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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