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TIGR01790

Source: TIGRFAM

Description

carotene-cycl: lycopene cyclase family protein

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016117
Biological process Carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
Subterm of
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
Subterm of

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj0g3v0210279.1
– PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1|
Domains
9
Lj0g3v0219209.1
–
Domains
8
Lj0g3v0231639.1
– PREDICTED: lycopene beta cyclase, chloroplastic-like [Glycine max] gi|356504708|ref|XP_003521137.1|
Domains
14
Lj3g3v1193490.1
– PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1|
Domains
9
Lj6g3v1211980.1
– PREDICTED: lycopene epsilon cyclase, chloroplastic-like [Glycine max] gi|356530411|ref|XP_003533775.1|
Domains
11
LotjaGi1g1v0665500.1
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
Domains
9
LotjaGi1g1v0665500.2
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
Domains
9
LotjaGi1g1v0665500.3
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
Domains
9
LotjaGi1g1v0665500.4
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
Domains
9
LotjaGi3g1v0178200.1
– Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplastic; TrEMBL-Plants: tr|A0A0L9UNF8|A0A0L9UNF8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0178200
Domains
9
LotjaGi6g1v0228800.1
– Lycopene cyclase; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UBL0|A0A0L9UBL0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
Domains
11
LotjaGi6g1v0228800.2
– Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
Domains
11
LotjaGi6g1v0228800.3
– Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
Domains
11
LotjaGi6g1v0228800.4
– Lycopene cyclase family; TAIR: AT5G57030.1 Lycopene beta/epsilon cyclase protein; Swiss-Prot: sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHF7|A0A0S3RHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228800
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 7.14