Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010314
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.066s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0180970.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| chr1 2075745 2092386 +
2 domain predictions
 –
Lj1g3v1526280.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356518443|ref|XP_003527888.1| chr1 18272805 18292132 +
2 domain predictions
 –
Lj4g3v0217750.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| chr4 2777939 2794774 -
2 domain predictions
 –
Lj4g3v0217760.1
n.a. n.a. chr4 2786227 2790836 +
2 domain predictions
 –
LotjaGi1g1v0135300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791156 21808026 +
2 domain predictions
 –
LotjaGi1g1v0135300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21806305 +
2 domain predictions
 –
LotjaGi1g1v0135300.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
 –
LotjaGi1g1v0135300.4
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
 –
LotjaGi1g1v0135300.5
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
 –
LotjaGi1g1v0342400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80457990 80472977 +
2 domain predictions
 –
LotjaGi1g1v0342400.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80458458 80472724 +
2 domain predictions
 –
LotjaGi1g1v0342400.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80459623 80472724 +
2 domain predictions
 –
LotjaGi4g1v0020600.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K373|I1K373_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2550963 2567864 -
2 domain predictions
 –
LotjaGi4g1v0020600.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
 –
LotjaGi4g1v0020600.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
 –