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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0180970 |
| Transcript ID | Lj1g3v0180970.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1843 | 1843 | – | – | |
| PANTHER | 12 | 728 | 717 | 0 | – | |
| PANTHER | 12 | 728 | 717 | 0 | – | |
| SUPERFAMILY | 94 | 161 | 68 | 7.04E-06 | ||
| Pfam | 106 | 408 | 303 | 1.20E-34 | ||
| SUPERFAMILY | 333 | 504 | 172 | 7.04E-06 | ||
| Gene3D | 431 | 517 | 87 | 5.00E-05 | ||
| SUPERFAMILY | 441 | 504 | 64 | 5.28E-08 | ||
| Pfam | 471 | 803 | 333 | 3.30E-67 | ||
| SUPERFAMILY | 534 | 671 | 138 | 5.28E-08 | ||
| MobiDBLite | 717 | 741 | 25 | – | – | |
| SUPERFAMILY | 765 | 800 | 36 | 5.28E-08 | ||
| Gene3D | 777 | 803 | 27 | 5.00E-05 | ||
| MobiDBLite | 931 | 954 | 24 | – | – | |
| MobiDBLite | 996 | 1035 | 40 | – | – | |
| PANTHER | 1064 | 1806 | 743 | 0 | – | |
| PANTHER | 1064 | 1806 | 743 | 0 | – | |
| SUPERFAMILY | 1286 | 1357 | 72 | 9.87E-16 | ||
| Gene3D | 1304 | 1350 | 47 | 8.20E-13 | – | |
| ProSiteProfiles | 1306 | 1347 | 42 | 14.933 | ||
| Pfam | 1307 | 1344 | 38 | 1.50E-07 | ||
| SMART | 1308 | 1346 | 39 | 2.80E-10 | ||
| CDD | 1311 | 1347 | 37 | 1.20E-15 | – | |
| ProSiteProfiles | 1353 | 1371 | 19 | 9.168 | ||
| SUPERFAMILY | 1416 | 1534 | 119 | 7.68E-05 | ||
| SUPERFAMILY | 1570 | 1667 | 98 | 7.68E-05 | ||
| MobiDBLite | 1724 | 1766 | 43 | – | – | |
| Phobius | 1844 | 1866 | 23 | – | – | |
| PANTHER | 1858 | 1945 | 88 | 0 | – | |
| PANTHER | 1858 | 1945 | 88 | 0 | – | |
| Phobius | 1867 | 1877 | 11 | – | – | |
| Phobius | 1878 | 1896 | 19 | – | – | |
| Phobius | 1897 | 3660 | 1764 | – | – | |
| MobiDBLite | 2040 | 2066 | 27 | – | – | |
| MobiDBLite | 2150 | 2209 | 60 | – | – | |
| MobiDBLite | 2291 | 2319 | 29 | – | – | |
| MobiDBLite | 2371 | 2407 | 37 | – | – | |
| MobiDBLite | 2419 | 2450 | 32 | – | – | |
| MobiDBLite | 2493 | 2575 | 83 | – | – | |
| Pfam | 2574 | 2672 | 99 | 2.00E-25 | ||
| MobiDBLite | 2590 | 2611 | 22 | – | – | |
| PANTHER | 2604 | 3213 | 610 | 0 | – | |
| PANTHER | 2604 | 3213 | 610 | 0 | – | |
| MobiDBLite | 2941 | 3000 | 60 | – | – | |
| PANTHER | 3233 | 3660 | 428 | 0 | – | |
| PANTHER | 3233 | 3660 | 428 | 0 | – | |
| SUPERFAMILY | 3289 | 3652 | 364 | 4.32E-121 | ||
| CDD | 3298 | 3658 | 361 | 6.68E-151 | ||
| SMART | 3317 | 3660 | 344 | 5.90E-160 | ||
| ProSiteProfiles | 3319 | 3660 | 342 | 107.643 | ||
| Pfam | 3349 | 3659 | 311 | 3.50E-93 | ||
| Gene3D | 3420 | 3503 | 84 | 7.00E-25 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0180970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0180970.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.