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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0420100 |
| Transcript ID | LotjaGi4g1v0420100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GAGA-binding transcriptional activator; TAIR: AT2G21240.1 basic pentacysteine 4; Swiss-Prot: sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4; TrEMBL-Plants: tr|H1ZNA3|H1ZNA3_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0420100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79547488..79548529) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGATGACCGCCAACATGAAAACGGTAGGCATAAGATGGAATACTACAGAGGAGCTCGTTCACCGGTAAATAGTAT GCGCAGATTTAGTGTACTTTCTGTTTTTTATCTTACACTGCTGGATTTATTAATTGGATTGGTTTTAAAACGTTCAGTGG GATATGGATCACCAGCATCAAGTAAAGGAGCCAAATGCACTAGTTATGAACAAGAAACTTAGGTCTATTATGGCTGAAAG GCAAGCTGCCCTTCTAGAACTTGAGCTAGAGGCTGCTATATCAGAAAAGAATGAAGCCTTGGCTGCCCGAGATTTAGCCC TTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTATTGCAACGAGACAATGCCCTTGCAGCCCTTCAAAAT CGAAACAGTGCTGTCAACTTCCCTTTCAGTGGTGGAAGTCAACGTGGATCGAAGTGGATTCACCATTCTCCAAACCATCT CTCTGACATAACAGAAACTTCATACATCACAAAGGATATGATAATAAGGGATGCATCACCAGTGACTATTGTAACTCCTG AAGATGTCAGATCTCATCAAGCTAAGAGAACGAAAGAGAGCAAGGTAATTAATTCCAAGTCATCGAAGCCACCTTGCAAA GTAAAGAAATTGGGTGAGGATTTAAATAAGAAGGCTTCTTCTGAAGGGACAAAGTTCAGATCTGAATGGGATAGTCAGGA TGTTGGCTTGAATTTGATTGCATTTGATGAAACTATCATGCCAGTCCCAGTTTGCACATGCACCGGCATAGCACGACAGT GCTACAAATGGGGTAACGGCGGATGGCAGTCATCTTGTTGTACCACCACATTGTCGGTGTATCCGCTACCACAGCTTCCG AACAAGCGCCACGCCCGCATAGGAGGGCGAAAGATGAGTGGAAGTGTCTTCACAAGACTTCTCAGTAAGTTGGCCTCAGA AGGCCATGATATATCTATACCATTGGATCTTAAGAACTACTGGGCTAGACATGGAACAAATCGCTACATTACCATCAAGT AG
CDS sequence (LotjaGi4g1v0420100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGACCGCCAACATGAAAACGGTAGGCATAAGATGGAATACTACAGAGGAGCTCGTTCACCGTGGGATATGGA TCACCAGCATCAAGTAAAGGAGCCAAATGCACTAGTTATGAACAAGAAACTTAGGTCTATTATGGCTGAAAGGCAAGCTG CCCTTCTAGAACTTGAGCTAGAGGCTGCTATATCAGAAAAGAATGAAGCCTTGGCTGCCCGAGATTTAGCCCTTCGGCAG AGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTATTGCAACGAGACAATGCCCTTGCAGCCCTTCAAAATCGAAACAG TGCTGTCAACTTCCCTTTCAGTGGTGGAAGTCAACGTGGATCGAAGTGGATTCACCATTCTCCAAACCATCTCTCTGACA TAACAGAAACTTCATACATCACAAAGGATATGATAATAAGGGATGCATCACCAGTGACTATTGTAACTCCTGAAGATGTC AGATCTCATCAAGCTAAGAGAACGAAAGAGAGCAAGGTAATTAATTCCAAGTCATCGAAGCCACCTTGCAAAGTAAAGAA ATTGGGTGAGGATTTAAATAAGAAGGCTTCTTCTGAAGGGACAAAGTTCAGATCTGAATGGGATAGTCAGGATGTTGGCT TGAATTTGATTGCATTTGATGAAACTATCATGCCAGTCCCAGTTTGCACATGCACCGGCATAGCACGACAGTGCTACAAA TGGGGTAACGGCGGATGGCAGTCATCTTGTTGTACCACCACATTGTCGGTGTATCCGCTACCACAGCTTCCGAACAAGCG CCACGCCCGCATAGGAGGGCGAAAGATGAGTGGAAGTGTCTTCACAAGACTTCTCAGTAAGTTGGCCTCAGAAGGCCATG ATATATCTATACCATTGGATCTTAAGAACTACTGGGCTAGACATGGAACAAATCGCTACATTACCATCAAGTAG
Protein sequence (LotjaGi4g1v0420100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDDRQHENGRHKMEYYRGARSPWDMDHQHQVKEPNALVMNKKLRSIMAERQAALLELELEAAISEKNEALAARDLALRQ RDEALAQRDNALLQRDNALAALQNRNSAVNFPFSGGSQRGSKWIHHSPNHLSDITETSYITKDMIIRDASPVTIVTPEDV RSHQAKRTKESKVINSKSSKPPCKVKKLGEDLNKKASSEGTKFRSEWDSQDVGLNLIAFDETIMPVPVCTCTGIARQCYK WGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSKLASEGHDISIPLDLKNYWARHGTNRYITIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 317 | 317 | 1.4E-154 | – | |
| SMART | 1 | 317 | 317 | 9.9E-134 | ||
| PANTHER | 1 | 317 | 317 | 1.4E-154 | ||
| Pfam | 9 | 317 | 309 | 1.2E-94 | ||
| Coils | 53 | 73 | 21 | - | – | |
| MobiDBLite | 159 | 181 | 23 | - | – | |
| MobiDBLite | 160 | 174 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0420100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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