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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0188000 |
| Transcript ID | LotjaGi2g1v0188000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GAGA-binding transcriptional activator; TAIR: AT2G01930.1 basic pentacysteine1; Swiss-Prot: sp|Q9SKD0|BPC1_ARATH Protein BASIC PENTACYSTEINE1; TrEMBL-Plants: tr|H1ZN99|H1ZN99_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi2g1v0188000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61757236..61758102) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGGTGATAATGGTCTTAACATCCGAAATTGGGGTTACTATGAACCCGCAACGTCCTTTAAGAGCCATCTGGGGCT GCAGCTGATGTCCACCATGCCCGAAAAACCTATGTTCGGCGGTCGCAATGCTGCGGTTTTATCCGGCGCTAATGGGGCAT TTCACAATCACCACCATAGGGACATTGGGATGCCCCAAGCTGCTACATACCCTATGGAGTACATGAGGGATGCATGGATT AGTAGTCAGAGAGACAAGTATATGCATATGATACCTACAAACCCGAGTTTTGGTGGTATTCCGGAGACATCTACAGCGCA CCATATACAAATGATTCCACCACCTGAGTTGACAAAGGAAGAAAGCCCAATTGATGAGGCAGTAGCCCCTGTTGCTGAGA AGGTGAAGGGTACTGGTAAGAAGAGGCAGGGACCAAAGTTGCCCAAATCCCCCAAAGCAAAGAAGCCAAAGAGGGGCCCT CACCTTCCTAAGGATGAGAATGCTGCTTCAGTTCAACGGGCAAGGGTTCCAAAGAAGACTGCTGAAATTGTTATAAACGG GATTGATATGGATATTTCAAGCATTCCAATTCCTGTTTGTTCATGCACCGGGGCTCCTCAACAGTGTTACAGATGGGGTT CTGGTGGGTGGCAGTCAGCATGCTGCAGAACTGGCATGTCAATGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGCGCT AGGATAGCTGGGAGGAAAATGAGTATAGGAGCATTTAAGAAGGTTTTAGAGAAACTTGCCGCCGAGGGTTATAACTTTTC CAATCCAATTGATTTGAAGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACCATCAGGTAG
CDS sequence (LotjaGi2g1v0188000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTGATAATGGTCTTAACATCCGAAATTGGGGTTACTATGAACCCGCAACGTCCTTTAAGAGCCATCTGGGGCT GCAGCTGATGTCCACCATGCCCGAAAAACCTATGTTCGGCGGTCGCAATGCTGCGGTTTTATCCGGCGCTAATGGGGCAT TTCACAATCACCACCATAGGGACATTGGGATGCCCCAAGCTGCTACATACCCTATGGAGTACATGAGGGATGCATGGATT AGTAGTCAGAGAGACAAGTATATGCATATGATACCTACAAACCCGAGTTTTGGTGGTATTCCGGAGACATCTACAGCGCA CCATATACAAATGATTCCACCACCTGAGTTGACAAAGGAAGAAAGCCCAATTGATGAGGCAGTAGCCCCTGTTGCTGAGA AGGTGAAGGGTACTGGTAAGAAGAGGCAGGGACCAAAGTTGCCCAAATCCCCCAAAGCAAAGAAGCCAAAGAGGGGCCCT CACCTTCCTAAGGATGAGAATGCTGCTTCAGTTCAACGGGCAAGGGTTCCAAAGAAGACTGCTGAAATTGTTATAAACGG GATTGATATGGATATTTCAAGCATTCCAATTCCTGTTTGTTCATGCACCGGGGCTCCTCAACAGTGTTACAGATGGGGTT CTGGTGGGTGGCAGTCAGCATGCTGCAGAACTGGCATGTCAATGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGCGCT AGGATAGCTGGGAGGAAAATGAGTATAGGAGCATTTAAGAAGGTTTTAGAGAAACTTGCCGCCGAGGGTTATAACTTTTC CAATCCAATTGATTTGAAGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACCATCAGGTAG
Protein sequence (LotjaGi2g1v0188000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSTMPEKPMFGGRNAAVLSGANGAFHNHHHRDIGMPQAATYPMEYMRDAWI SSQRDKYMHMIPTNPSFGGIPETSTAHHIQMIPPPELTKEESPIDEAVAPVAEKVKGTGKKRQGPKLPKSPKAKKPKRGP HLPKDENAASVQRARVPKKTAEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCRTGMSMYPLPMSTKRRGA RIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLKTYWAKHGTNKFVTIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 288 | 288 | 2.1E-127 | – | |
| PANTHER | 1 | 288 | 288 | 2.1E-127 | ||
| SMART | 1 | 288 | 288 | 3.6E-164 | ||
| Pfam | 1 | 288 | 288 | 6.9E-109 | ||
| MobiDBLite | 133 | 176 | 44 | - | – | |
| MobiDBLite | 141 | 158 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0188000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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