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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010417
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.239s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0361939.1
n.a. Embryo-specific protein [Medicago truncatula] gi|357444229|ref|XP_003592392.1| chr0 190730669 190732934 +
2 domain predictions
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Lj1g3v4657800.1
n.a. Embryo-specific protein [Medicago truncatula] gi|357444229|ref|XP_003592392.1| chr1 55274230 55280863 +
2 domain predictions
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LotjaGi2g1v0155000.1
n.a. Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|I3SY26|I3SY26_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0155000 LjG1.1_chr2 55282415 55285124 -
2 domain predictions
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LotjaGi3g1v0009500.1
n.a. Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|I3SQJ1|I3SQJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0009500 LjG1.1_chr3 1068594 1071615 +
2 domain predictions
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LotjaGi3g1v0011300.1
n.a. Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|I3SN54|I3SN54_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0011300 LjG1.1_chr3 1248459 1250428 -
2 domain predictions
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LotjaGi5g1v0308100.1
n.a. Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|C6SVI7|C6SVI7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0308100 LjG1.1_chr5 62591430 62598661 -
2 domain predictions
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