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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0011300 |
| Transcript ID | LotjaGi3g1v0011300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|I3SN54|I3SN54_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0011300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1248459..1250428) extracted from Lotus japonicus Gifu genome v1.2.
AAGTAATTCTTATTCGAGTTTTGTATATTAAAAAAATTTCTTGTTGAAAGAGTTGGTGACTAAGTTTTATTATGATGTGA ATATTTATGATTTGAATAGAATCATTTTTTGTGAGAATATATATATGCTTGCCATGCTAGAATTATAAAATGCAGCAATC TAAAACCAGATTATTGCTTTCCTCACAGAAGAAAAAAAGGTTGCATTGCTGTGCAGGTCACAACATTTAAACCATGAAAA CTCTGACTTTAATCTTCACATTTTGCATCATTGTTGCCTTCTCACAAGCAAAGCCAGCAATAGTCCCTCGGCCTGAACTA AACAAAACCCTCAAGGTGAACCGTACCCAACAATTACAACAGGCAAGAAACTTCACATCCTCTTAGCTTTATTTTTTATT TTTTGAAATATTCAAGTGCTTCCATTAATCCAAAATCAAAAACCAACCCTTATAATTTACCTAATAAGATTAGTCACTAT ATATGAATTAGTTAACCAATATTTTTTACTGAAAGAACATATATAGATACATTACTATTATAATTACTCAGATTTCTTAT TGCATCTTAGTTAACCACAAATTGCAGAATGATCAGAGTAGCAGCTGTGCTTACTTGCTGACCATAATGACAAGCTGCAT TTCTCCCGCGTATACAACAGATCAAATCAGTCTTCTATTTGGCGACGCTCATGGCCATCAGGTACTTCCTCTTGTACTAA TTAACTAATTAAACTTAGCTACCTAAAATTCAACCACAACCCTAAACTATCAAATCAGCCTTCTATATGTGTGATAAGAT TTATAAAAATCATAAGGAAATATATCACAAACTCTAAAATAAATAATAATTTCTATTATTAGAGATGACGATTGAAACAG AAGGAGCTCATCGTACCAACCAATTTAGCTCGTCATTTTTTTACAATCCGCTATTTTAGTTTGCCTGCAGATGGCATGTT GAGGGTATGATATATAGGCTGGCACTGGATTATCATTTTTTTAAAAAAAAATCTTTTGAGTAAATAAATTAACCAGCTAG AGATTATTTGGGTTCTAATTCCAAATTAGTTTGTGAATTTTTATTTATCTATCTATCTAAACTCATTTATGCTAAACTAA TACTAATTTTTTTAAAAAATTTATTGTTTTAACTTTTCTACTCTTCATTTATTGTGTTTTCCAACTTGACACACCACACT TTAAGTGGGGCAGGATATACCACCTCATTTTAGCATCCCTATTATCATAAGTTGTCGTGAATTAAATTTAACAAATTACA AATAGTATATGAGTGCGCGTATATTTTATTTGATTTGTGTATGGTAGAATCTCTCATATTATTGCATATATGCAAGTGAA ATTAATTATAAAAAAATGCATAGATTCGGTTTTTTGTGTGTTTATTACCAATTGTGTGGTTGTGGATGATATTCAATTCA TGATCAGGCTTATATTGCAAGACTAGATGATCCTGCATCAGGGACGTTCCAACAGTGTGCAATAGATGTATTTGACGTAA TTGGACCATGCTTAGGCAAAATCTGCCATCTTTACCTATATAGGTCTGGATCCAATGGTTGGGTACCTGAAAGAGTGATC GTGGATGATTATTACTACGGGCCTATTGCATTTGAATACAACATTGATATTCCTGAAGGTGGCGGCTTGGGCTTTAACTA TTGTGGTTAATCTGTAAAATGATTTATAAACATATCTATATGATGAAGATACCCAAAAAAAACAAGTTAGAAATGAAGAG AAGAGATATATATATATATATATATATATATATATTATAATAAATGTAATATATGATGATATAATAAGAAAAGAAAGATG AGGAGAAATATGAGGTGCGTACTTATGAAGTGTATGCATTGTTTATGTGTCTAAGTAATTGAATGAGTTTTCTTCACATG CTGCTTTTTAGTGTTTAGGGTTGCTTTTTTTCACGTTTATATTATTATTA
CDS sequence (LotjaGi3g1v0011300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACTCTGACTTTAATCTTCACATTTTGCATCATTGTTGCCTTCTCACAAGCAAAGCCAGCAATAGTCCCTCGGCC TGAACTAAACAAAACCCTCAAGGTGAACCGTACCCAACAATTACAACAGAATGATCAGAGTAGCAGCTGTGCTTACTTGC TGACCATAATGACAAGCTGCATTTCTCCCGCGTATACAACAGATCAAATCAGTCTTCTATTTGGCGACGCTCATGGCCAT CAGGCTTATATTGCAAGACTAGATGATCCTGCATCAGGGACGTTCCAACAGTGTGCAATAGATGTATTTGACGTAATTGG ACCATGCTTAGGCAAAATCTGCCATCTTTACCTATATAGGTCTGGATCCAATGGTTGGGTACCTGAAAGAGTGATCGTGG ATGATTATTACTACGGGCCTATTGCATTTGAATACAACATTGATATTCCTGAAGGTGGCGGCTTGGGCTTTAACTATTGT GGTTAA
Protein sequence (LotjaGi3g1v0011300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTLTLIFTFCIIVAFSQAKPAIVPRPELNKTLKVNRTQQLQQNDQSSSCAYLLTIMTSCISPAYTTDQISLLFGDAHGH QAYIARLDDPASGTFQQCAIDVFDVIGPCLGKICHLYLYRSGSNGWVPERVIVDDYYYGPIAFEYNIDIPEGGGLGFNYC G
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 5 | 160 | 156 | 1.4E-51 | – | |
| PANTHER | 5 | 160 | 156 | 1.4E-51 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Gene3D | 17 | 143 | 127 | 2.7E-7 | ||
| Phobius | 20 | 161 | 142 | - | – | |
| Pfam | 41 | 160 | 120 | 2.0E-37 | ||
| SUPERFAMILY | 47 | 156 | 110 | 1.04E-15 | ||
| CDD | 50 | 135 | 86 | 7.31647E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalase activity | Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0011300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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