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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0009500 |
| Transcript ID | LotjaGi3g1v0009500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|I3SQJ1|I3SQJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0009500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1068594..1071615) extracted from Lotus japonicus Gifu genome v1.2.
GGTGCAGTTAAAGAAAGACTGAGCTACCCTTATCTCTGCCATGCCATAATAAAACCAAACCAAGCGAGTTCCTCGTGGGA GTGAGAGTCAGTTGTTTCTCCTTCTCTCTCACACGAGTCAAGCAGGGCCTCCCACCGTTCGACAAAAACAATGAAAACCC TCACCTTAATCCTCACATTTTCTATCATCTCTGTCTTCTCACAAGCAACACTATTACTCACTGATCCACCTCAACCCAAC GAATCTTTCAAGCCCAATCTAACCCAGCATCAGCAGGTAAGGTAACAATGAAAGTTTTATTTGATGAAAATTGCTTCCAA ATAGAGAAACACCCTTTTAATTCCAAGTATTAAGAATCATCCAGTGTCACATAGTATCAGTATTCCCTTTACCAATTAAT TTTAGTTACTATGTGATCTTCATTTTTTGAAATATTCTAAATACAGGAATGCCCTTCAATTCTAATTATGATAAATCATC TAGAGTAACTTAGTAGTTATTGAAATATTTCAATTTGAGGAATACCCTTTAATTCAAAGTTTTAAAATTTATCCAGAGTA ACATAGTAGCTTTCAATTAGAGGAATACCCTTTTATCTATAAATCTTAGTTACTATGCATGTTCTAGCTATGTAACTGCT ATGACTGAAAACATAGTAGATAGCTTTGTTTGAGATCAAAGGGTACTCAGATTTCAATTTTAAACTGAAGCATTTCCAGA TCTTGTTGCATCTGAAATTAAAGTAAGATGTGGCTTTTGTATCTTGCAGAATGCGGGCTGTTCTTACACGGTCACCATAA GGACAAGCTGCAGTTCTCCCTCATATACCAGAGATCGCATCAGTCTCTCATTTGGGGATGCTTATGGCTACCAGGTCAGA TTCCATCTGTGGTGTGCTAACTATGAATGAACATTCATCCATACCGCTTTGATGATATAACTATGAATGAACATTCATCC ATCTGTGGTGTGCTAACTATGAATGAACATTCACCCATACCGCTTTGATGATATAAATTATAAATATAATCTAAATTCAC TCATGCGTCTTCACCTATCAATTTAGAGTCTCTATGGCTAAGTAGTCTATGGTTCGATCTTATTGCTCCCATTATTGTAA TAAAATAGTTAAATTTCAGCATAAAGTAGTTGGACTAATGCAGTGGCTGCACTTCAAATCCAATGGAATATTAAGGGTTA GAAATAGGCCCTGTTTGGAAGAAATTATTTGAGTTTATCTTATGGCATAGTAGCCTATGCAAGTGCTTGAGAGAACTTGT ATAAATAGCTTATGACCCACTTATAAGCTATTTTGAGCTTATTTTCATTAGTTGATCAGATTAGCTTATAAGTAAGCGTT CCTATAACCTATTACAAAAATAGGAAAAGAGATTTCGTATATCCATAGGAGGAGATCATATGAAAAACATAACCCATCCT TTCCTTTGCTTGGGTTACTGGCCATCTGCCGGAAGTTTTGGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCT AAGTATAGTGATAGGTGAATTGATTTTTTTTTGGAAAGGGAGTGTGTGCGAGTTGTTTCTTTCAAAAAATAGATTGGATC TAACCAACTGCGCTTTTTTCGTTTTGTCTCTCATAAGTGTTTAATTAAGTTGTTTACCCAAATGCACCAAAAATCGTTCA TCAAACTGCTTAAGTTTTTGGGATAAATCATTCATCAAACTGCTTAAGTTTTAGAGATAAATCATTCATCAAACTGCTTA TGTTTTTCGGATAATTGGCTCATCATATCTATGTCCTTACAATATTTTGTATGTGCCTAAGTGAATGGACATATAGAGGG TAATTGATGGCTAATTAAGATATCTGTTGGTTGGATAATCAGGTTTATGTTCCAAGACTGAATGATCCTTCTCCAAGGAC ATTCGATTTGCTTATAAATAAGTGTGCTTATACTTGCCTATAACCTATTTTGAGCTTATTTCATTAAGTTTATCAAATTA GCTTATGATAAGGGCTTATGACTGTTTACCCAAATGCACCCAAAATCATTCATCAAACTACCCAAGTTTTTGGAATAATT GGTTGATCATATCTCATGTCCTTACAATATTTTATACGTGCCCAATTGAGATTAGCCAAATGAATAGTTAATGGACATAG AGTGGGTAATTCTAATTGATGACTAATTATCCTTGGTTGGATACTCAGGTTTATGTTCCAAGACTGGATGATCCCTCGTC AAGGACATTTGAGCGTTGCTCTACGGATACATTTCAGATAAACGGACCGTGTACTTACCAAATATGCTATCTATACCTAT ACAGGAGTGGATACGATGGTTGGATACCAGAGTCAGTGACAGTATCTGGCTACAACTCCCAGCCTGTTACATTTTACTAC AACGCCTTTATTCCTGCTGGTATTTGGTTTGGGTTTGACTACTGTCGTGGTTATTTACCTTCCACTGCAGCAATGTAGTC TAGTGAACCTTCTTGATCTTCTTAGCCCCAAGAGAAAAATAAAATAAAGGTACATCTGTGTAAATGAACCCTGTTATATG TGGATTTGCAGTGAAGTGTACTTTCTTGTGGGTTGTTTTCTGTATGTGTGTGTTTGGATATCAGTTGAGTTAACGTGAAA ACACATTCATCTGAATCCACAACTTGAGTTTCGTACACTTTTTGCTTCGAAGTGTGACGTCAGTTGCACTAGCTCCAACT GGAGGCTTTACTATTGCTGAACAGGCCTGAAATAAAACAAGGGCAGGTAGTTTTCTTAGTTGAGTGTCTCTGATATGTTC CTAATGAAATTTTCTCTTGGAACCAGAAAAAAAAAGGGAAAGCTATTGAGTAATATATTTCTTAAGGAAAGAAAATCAAA GAAACGCAAGAGATAGCACTTGTCATGTTCAAAAATAAAGATTTGGCATTAGAAACTATATATCAGTAAGTTTGAATCCA AAGTTAAACTATCATGCAAGTTTCTTGCAACTCCTTGTCCAACACTTTCGCAACAGAAAGCA
CDS sequence (LotjaGi3g1v0009500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACCCTCACCTTAATCCTCACATTTTCTATCATCTCTGTCTTCTCACAAGCAACACTATTACTCACTGATCCACC TCAACCCAACGAATCTTTCAAGCCCAATCTAACCCAGCATCAGCAGAATGCGGGCTGTTCTTACACGGTCACCATAAGGA CAAGCTGCAGTTCTCCCTCATATACCAGAGATCGCATCAGTCTCTCATTTGGGGATGCTTATGGCTACCAGGTTTATGTT CCAAGACTGGATGATCCCTCGTCAAGGACATTTGAGCGTTGCTCTACGGATACATTTCAGATAAACGGACCGTGTACTTA CCAAATATGCTATCTATACCTATACAGGAGTGGATACGATGGTTGGATACCAGAGTCAGTGACAGTATCTGGCTACAACT CCCAGCCTGTTACATTTTACTACAACGCCTTTATTCCTGCTGGTATTTGGTTTGGGTTTGACTACTGTCGTGGTTATTTA CCTTCCACTGCAGCAATGTAG
Protein sequence (LotjaGi3g1v0009500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTLTLILTFSIISVFSQATLLLTDPPQPNESFKPNLTQHQQNAGCSYTVTIRTSCSSPSYTRDRISLSFGDAYGYQVYV PRLDDPSSRTFERCSTDTFQINGPCTYQICYLYLYRSGYDGWIPESVTVSGYNSQPVTFYYNAFIPAGIWFGFDYCRGYL PSTAAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| PANTHER | 3 | 159 | 157 | 3.7E-80 | – | |
| PANTHER | 3 | 159 | 157 | 3.7E-80 | – | |
| Phobius | 4 | 16 | 13 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 166 | 142 | - | – | |
| Pfam | 34 | 156 | 123 | 4.9E-54 | ||
| Gene3D | 43 | 148 | 106 | 1.4E-7 | – | |
| CDD | 46 | 156 | 111 | 2.10469E-30 | – | |
| SUPERFAMILY | 46 | 152 | 107 | 5.47E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0009500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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