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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0308100 |
| Transcript ID | LotjaGi5g1v0308100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Embryo-specific 3; TAIR: AT5G62200.1 Embryo-specific protein 3, (ATS3); Swiss-Prot: sp|Q6NPM5|ATS3B_ARATH Embryo-specific protein ATS3B; TrEMBL-Plants: tr|C6SVI7|C6SVI7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0308100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62591430..62598661) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAGAGGGCTTGAAAATGAGGTTTTCCTCATGGAATTCAAATCACACCACAACTATCCTTCCTTTCCAGTTTCCTGAA CAACCCCACTTTCTTATTCCCATTGAATTTGGTAATTTGTGCCGTAAAGTTTAAACTTTCAGAAAGAAAAGATGATCAAA CATGTTCTTTTCCCTCTTCTTCTTCTCTTCCTTGGTTCTGGATTGACACTCTCAGTCTCAGAGTCCCAACCTGCTTCTCT ACTCCCTCACGCTGCTGAGTCCTTCAACATCAGCTATATCCAGGTAACGATGCTTCTCATGAACCCAATTGTGAAAAAAA TAGAAACCCTTTTGAATTTTTCTTATTTCTCATCATATATGCATAATATGAAGGCAAAGACTTAATTTTTATTTTTTATT TTTGTTGGTTTTTGTATAGCTGAAGAACGCAGGGAGTTGTTCTTACATGGTGTATATATCAACTAGCTGTTCTTCTCCTA GGTATACAAGGGATCAGATTAGTATTGCTTTTGGGGATGCTTATGGGAACCAGGTTTTGCCTTCTACAGTTCTACTTCAT TCAATTTCTCCATTTAGTTATTTATTTATTGCTTTTTCAGAAATGTTGTTTATTTGGTTCAGGATGAAATTTTGAGTGAA ATTCTTTGAAATATATTGGTTGTTGAAGATTTATGAACAAACCAACCATGGAATTGAACTCTGAAGTCTTAATCATGGAA ATTCAGTTTTTCATTGGATTTTATTTATTTTTGTATGCTATATTTGTTTTCTTTTGCTAGTGGAGTTAATAGGTTAGCAT TTATGGGGATGAATTTTTAACTCCATTTCTAGATATTTTGTTTTGCGTTGTCCTTCTTAGATGAGTTACTCTATAATAAG CGTTTATGACAAAAAGCGCCCAGAAGCACTTATTTATAAGCTAATTCTGTTGATTGATTGACTTTGAAATAAACAAACAG CAGAAGATTAATTTTATGCTATTATTTAGGAAAATAACAGTCTTATTGACTGATAAGATAGAGCTGTTTCAGCTTCTATT TTTTAGGCTTTCATATAGTAGTTAACGTTTTTGAATTTGAATTTTATGTTGGTCATTCTGTTGTATAAAACCAGTTGCTA TGCTGCTGAATAAAAACATGCTTTATGCTCCCAATTCTCTGCTATCGTTCTTCTCTTCTACCCATACTATAATTTTAAAA TAACCAACAAATTGGCATCAGAGCCCTCTTCTTGAGGGACCTGTAAAATGGATGCTGGATCAAGCTTCTCACATGTTGCT ACTCCTGTCTTTGATGGGGAAAGCTATGACCTTTGAGCTGTGAGAATGGAGTCCTACCTAGATGCTTTAGATCCGTGGGA AGCCGTGGAAGAGTATTATGAAATACTTCCGCTGCCGAATAATCCTACCATGGCTCAGATCAAAAGTCACAAGAAGAGAA AAACAAGAAAGGCAAAGGCAAAAGCTTGTCTTTTTGCTGGCGTTTAAAAAACGATCTTCCCCAGAGTCATGACACTCAAA ACTCCCAAAGAAATTTGGGACTACCTGAAGGAAGAATATGCAGGAGATGAGAGGATTCGAAGCATGCAGGTGTTGAACTT GATGAGGGAATTTGAGTTACAAAGAATGAAGGAGTCAGAGACAATTAAAGAGTACTCAGACAAATTGCTCACCATTGCCA ACAAGGTAAGGTTGTTGGGCACTGAATATCCTGATTCCAGGACTTTGGCAGAGGTGTTACATGCATTCCAAGCACAAGAG CAAAGAAGGCTTATGAGGCAAGAAGGAACTACAGAGGGTGCCTTACAAGCCAAACTGCAAAACAACAACGGTGGAAGAAA CAAGAAGAAGAAGCAGAACAATTTCAACAAGCCTCGAGGTTCTAACAAGTACCACCAGAAAAACAATACTCAGGTTTCTC CACCTTGTCCTCACTGCGAAAAGACAAATCATCAACCAAAATGGTGCTGGTGGAGGCCAGATGCAAAATGTCTCAAGTGT GGCCAGCAAGGACACATGGAAAAGGTATGCAAGTCTCATCAACAACAAGGAGAAGTCAAGGTTGCTGAGGATCAACAAGA AGAGGAACAATTGTTTGCAGCAACATGCTTTGCTGCCAAAAGCTCCACCAAATGGCTCATAGACAGCGGCTGCTCAAACC ACATGACTTTTGACCTTGAACTCTTCAAAGAGTTTAAAGAAAAAAATTCTAAAGTCAAAATTTGTAATGGAGCTTATCTT GAAGGAAAAGGAAAAGGAACAGTGGCAATTCAAAGCCATACAGGTCTGAAATTAATTTCAGATGTTTTATATGTTCCTGA AATTGATCAAAACCTTTTGAGTGTTGCTCAGTTGCTGGAAAATAGCTATAAGGTGCTGTTTGAAGACTTGCACTGCCAGA TCAAAGATCCAGAAGACAAAGAAGTGTGCAAAGTTCAAATGAAAGACAAAAGGTTTGTCTTGGATCTCATGAACCTAGAA CATGCTGCAGTGCACAAAGAAGTTAGCAACAATACAAACTTTGGCATAAGAGATTGAGTCATTTCCATCATGACGCTCTA ATATTCACGAAGAAGAACAATCTTGCAAAAGGCTTACCGGAATTAGAAGAAGATCTTCCAACATGTGCTGCCTGTCAATA TGGAAAGCAGTCAAGACTCCCATTTCCACAAAGTACGGCATGGAGGGCTTCACAAAAGTTACAATTAGTTCACACAGATG TTGGAGGACCCATAAACACACAATCATTGAATGACAGTAAGTATTATATTGTTTTCATTGATGATAACACAAGGATGTGC TGGATTTATTTTATGAAGCTTAAATCTGAAGTTGCTGACATCTTTTGGAAGTTCAAAGCCTGGGTTGAAACTCAGAGCAA GTGCAAATTGCAGATGATCAGATCTGATAATGGATCTGAATATACCTCAGGAAAATTTAACAAGTTTTGTGAAGATGCAG GCATAGAACACCAGCTGACAGCACCTTACTCCCCCCAGCAGAATGGTGTTGCAGAAAGAAAGAATAGGACAATTATGGAG ATGGCTAGATGCTTACTTCATGATTTTTGCAAAACAGGCTGCCAACAAAAGCTTAACAAAGAAGAACACCGTTTGAAGCA TGGTATGGTTACAAACCTGAATTGCTTAATTTGAAGACATTTGGCTGCTTGTGTTTCTCTCACATTCCTCATGTAAAGAG AGACAAACTAGACAAGAAAGCAGAATCTGAGATTTTTGTAGGCTATAGCTTAACTTCAAAGGCCTACAGGATCTATTTTC CACATAAGAATAAAATAATTGTTAGTAGGGATGTTAAATTCATGGAGTCAGATAGCTGGAGTTGGGAAGATGAAAATAAA TCTGAATTCCAGGAGGAGAATGAAGATGTGGATGATGAACCAGTCAGAGGAACAAGATTACTTTCTGAAGTTTATCAAAG GTGCAATCTTGCTGTCATGGAGCCTGCTGGATATGAAGAAGCTGCAACTGATCAAAAGTGGATAAATGCAATGACGGAGG AGCTGAAAATGATTGAAAAAAATCAGACATGGGAGTTGATGGACAAACCAAATCATAAGAAAGCCATTGGAGTCAAGTGG GTTTATAGAACCAAGCTTAATCATGATGGTTCGGTGAACAAGCATAAGGCAAGACTTGTTGTCAAGGGTTATGCCCAAAT GTTTGGGGTGGATTTCTCTGAAACATTTTCCCCAGTTGCAAGGTTGGATACAATAAGGCTGCTGCTTGCACTTGCTGCAC AAAATGATTGGACTGTACACCAATTGGATGTCAAATCAGCCTTTTTGAATGGATACTTGGAGGAAGAAATTTTTGTTGAA CAACCAGAAGGATTTGTTCTTCAAGGACAAGAAGATAAGGTTTATCGATTAAAGAAGGCATTGTATGGCTTAAAACAAGC ACCAAGGTCTTGGTACAGCAGAATTGATACACATTTAGAAAGCTTAGGCTTCGTGAAAAGTCTAAGTGAGTCTACCTTAT ATGTTAAAAAGGTGGATGAAGATATACTTGTGTTATCTCTATATGTTGATGATCTATTTGTTACAGGAAGTAGCAAGAAG ATGATTGACAAGTTTAAAAAAGAAATGGAAGATGTCTTTGAAATGACCGATCTTGGAAGGATGACATTCTTTCTTGGTAT GCAAGTGCAGCAAAAGCAACATGAAATATTTGTGTGTCAGGAAAAGTATGCAAAGGAAGTCCTCAAGAAGTTCAACATGA AAGAGTGTCATCCAACAGCTACTCCAATGAATCAAAAGGAGAAGTTTTGCAAAGAAGATGGAGCTGAAAAGATTGATGAA AAGCTGTCCAGAAGCTTAATAGGATGTTTGATGTATTTAACAAGTACCAGGCCAGATATCATGCATTCAGTAAGTTTGCT ATCAAGTGATTGGGCAGGATGTGTTGATGACATGAGAAGCACATCTGGTTATTGTTTTACTCTTGGTTCTGGAGTTTTTT CATGGTGTTCTAAAAAGCAAGAAATTATAGCTCAGTCTACAGCGGAAGCCGAGTATGTAGCTGCTGCTGCTGTGAATCAA ACTCTTTGGATTAGGAAAATCATGGCAGATTTGCATATGGAACAACATTGTAGCACTCAGATTTTGGTGGACAATCAGGC TGCAATTGCAATATCCAATGATCCAGTGTTTCATGGAAAAACAAAGCACTTCAAGATAAAGCTTTATTTTCTAAGAGAGG TTCAAAGGGAAGGAGAAGTGAAGCTAATGTACTGCAAGACAGAAAATCAAGTAGCTGATATCCTAACCAAGGCACTTCCA AAATCCAGATTTGAGTTCTTGAGGCAAAAGCTTGGAGTTTGCAGTTCCAAAGTCAAGGAGGAGTGTTGATTGATTGCCTT TGAAATAAACAAACAGCAGAAGATTAATTTTATGCTATTATTTAGGAAAATAACAGTCTTATTGACTGATAAGATAGAGC TGTTTTAGCTTCTATTTTTTAGGCTTTCATCTAGTAGTTGTTATGTTTTTGAATTTGAATTTTATTTTGGTGATTCTGCT GTATAAAACCAGTTGCTATGCTGCTGAATAAAAACATGCTTTATGCTCCCAATTCTCTGCTATCGTTCTTCTCTTCTACC CATACTATAATTTTAAAATAACCAACAAATTCGAGCAACTTATTGAATGAAGTTGAAAATATGTTAACAAATAAGTATAT GCTCTTATTCGGAAGCTAATCTATACAGCTTATGAGACTAAGCTCAAAACAACTTATAAGTAGGTCATAAACTATTTACC TAAATTCCTCCAAACACTTGGATAAGCGTTTATGCGATACGTTAAACTCAAGTAAGCTCTTCCAAATAGGTCCTATATCA CTTTGTCATAGGTTCTAATGTCCACGGTTTGCTACTATTTTTGTGTGTAAAATGAATAACTGTCTAACATAGACTTAGTT TTTCTGTTGGATAGCTCTTGAGAGTTGAGATATGGTTATGTTGGAGTCTCTCTACTAACAAAGCTTTTTTATTAAGAATA GAATGTTGCTTACTTTTGGTCAATTTGTAATGTTTTATCTGCAAAGGTACATATATAACTATATAAGCTATCTTGGCTGA ATGATAAATATGGAAAAATCACAGAACAGATTGATGGCTTTTGAATCCATGTTAATAAATTGCATTTGCATAGACCAGAC GGGGTAGAATCTGAGAAATAAGGGTCTCTTTTTGTTTATCTTCCTAATCAAGGAAGTTTTTTATTATTAACAATTAGAAG TTCATTTTCCCCCTTTCACATATTATCAGATATATGCTCCAAGACTAGATGATCCAAATTCAGGCACATTTGAGAGCTGT TCTTCAGATACATTTCAGATATACGGGCCATGTGCATATCAGATATGTTATGTGTACTTGTATAGATCTGGATTTGATGG TTGGAAGCCTGAAAGTGTGAAAATCAATGGTTATAACGGCAGGCCTGTTACATTCTACTATAACACGTTCATCCCCCGAG ATACATGGTATGGGTTTAATTTGTGCAACGCTGCTGCTTCTTCACATCAAGTAACTGTTCAGAAATGGCTTATATGTATA GTCCTAGGAGTTCTTCTTAGCTTTTGGTTGTAAGTTTATACACTTCTGTATTTCCTATATCTTGTATCCATGAAACTTGG TAGTTTGTACTTTGCTTAACAAGTAGAGGCACAAGATGTGGAAAAACCCTTGGGCCAAGTTAGTTAGTTATGTAGCTTTC TTTTGTGAATTCTTTTCTGGTTTATGATCAGTTTAGTGTTTGAAGCTTATGGAACAGAGAGAAGTGTTTGAGGTTGGTGT TGCAAATTGAAGACTGGTAAATAATGGCTATTGGTATTTTTGCTGAACAATTTATGATTCATCAGGGGAAGTAAGATTGA AATTAATTTTGGTTTAAATGGAAGCAATAGGAGTAAGAATAACTTTAAAGTTATTCTTCTGAATGACTGTTGGTAAATTT TAGCCTTAAAGAGTCTCGAACCTGAATATATGATGTGATTCATTGTTACTCTTCTAGTTTCATTTTGATCAAGCAGCAAA TGTCAAACTACCATCAATCTTGTTTAGTTTACTCAAAGCAAGTAATGAGAGAAACTTCACTATTTCCCCTAATTTCATTT CCTCGTCTACTGTTCTAATTATGTTCCCAGAGAATACATGATATTTTCTCCTACTGCCATCTTTTACCTCAACAAGCCCA AGCTCAACAGGCTCGTTGGAAAATTTATCTATGCCAAGAAGCTTTGCCTCAAAGTCCTTGCACTCCCACAAAAACCCCAA CATTCAAATCAGCCACGAAGATGAGATAGAGCAATCACACCCCAAAAACCCATAGATGAGTATCATAAAATATCTCTCTT TTTCTTTCACATAACATATTAGAATTTGAGTGGTTTAACTCAACTCAAAAGCTAGCTCATGAGTTGAGAGTTGCTCTACC CACTTATAAATGCTATATATGTCATATCTCTAACCAATGTGAGACTTCTAACACAACAACATAATCCAGCCTCAATAGTC CTACTACCCTTACCTTTCTCCACGAAAATCTTCCTCAACATGAATCTCAAGTAACCCAAAACCCCATAAAACACCAACAG CCCGAAACACAAAACACCGTAGCATGTAGGAGCGAAATAGGTATAGTGTTGGTTGAGGAGTTTAGGAGTTGGGGAATTCA TGGTTTAGAACATTGTTTCTTGTGAGGTGAGG
CDS sequence (LotjaGi5g1v0308100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAACATGTTCTTTTCCCTCTTCTTCTTCTCTTCCTTGGTTCTGGATTGACACTCTCAGTCTCAGAGTCCCAACC TGCTTCTCTACTCCCTCACGCTGCTGAGTCCTTCAACATCAGCTATATCCAGCTGAAGAACGCAGGGAGTTGTTCTTACA TGGTGTATATATCAACTAGCTGTTCTTCTCCTAGGTATACAAGGGATCAGATTAGTATTGCTTTTGGGGATGCTTATGGG AACCAGATATATGCTCCAAGACTAGATGATCCAAATTCAGGCACATTTGAGAGCTGTTCTTCAGATACATTTCAGATATA CGGGCCATGTGCATATCAGATATGTTATGTGTACTTGTATAGATCTGGATTTGATGGTTGGAAGCCTGAAAGTGTGAAAA TCAATGGTTATAACGGCAGGCCTGTTACATTCTACTATAACACGTTCATCCCCCGAGATACATGGTATGGGTTTAATTTG TGCAACGCTGCTGCTTCTTCACATCAAGTAACTGTTCAGAAATGGCTTATATGTATAGTCCTAGGAGTTCTTCTTAGCTT TTGGTTGTAA
Protein sequence (LotjaGi5g1v0308100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKHVLFPLLLLFLGSGLTLSVSESQPASLLPHAAESFNISYIQLKNAGSCSYMVYISTSCSSPRYTRDQISIAFGDAYG NQIYAPRLDDPNSGTFESCSSDTFQIYGPCAYQICYVYLYRSGFDGWKPESVKINGYNGRPVTFYYNTFIPRDTWYGFNL CNAAASSHQVTVQKWLICIVLGVLLSFWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 189 | 189 | 1.3E-86 | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 189 | 189 | 1.3E-86 | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 20 | 16 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 189 | 164 | - | – | |
| Pfam | 43 | 161 | 119 | 3.0E-53 | ||
| Gene3D | 48 | 157 | 110 | 3.9E-5 | – | |
| SUPERFAMILY | 49 | 158 | 110 | 3.27E-21 | ||
| CDD | 51 | 162 | 112 | 9.20491E-30 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0308100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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