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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010979
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.826s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0762230.1
n.a. 30S ribosomal protein S13 [Medicago truncatula] gi|357461657|ref|XP_003601110.1| chr1 9808083 9809063 -
2 domain predictions
1 GO term
Lj3g3v0044230.1
n.a. PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502080701|ref|XP_004486650.1| chr3 531965 537128 +
2 domain predictions
1 GO term
Lj3g3v0044230.2
n.a. PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502080698|ref|XP_004486649.1| chr3 531965 537128 +
2 domain predictions
1 GO term
Lj5g3v1914120.1
n.a. PREDICTED: 40S ribosomal protein S18-like [Cicer arietinum] gi|502118906|ref|XP_004496437.1| chr5 27227593 27228222 +
2 domain predictions
1 GO term
Lj5g3v1914120.2
n.a. PREDICTED: 40S ribosomal protein S18-like [Cicer arietinum] gi|502118906|ref|XP_004496437.1| chr5 27227593 27229366 +
2 domain predictions
1 GO term
Lj5g3v1949690.1
n.a. PREDICTED: 40S ribosomal protein S18-like [Glycine max] gi|356499364|ref|XP_003518511.1| chr5 27444897 27446559 -
2 domain predictions
1 GO term
LotjaGi1g1v0253300.1
n.a. 30S ribosomal protein S13; TAIR: AT5G14320.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P42732|RR13_ARATH 30S ribosomal protein S13, chloroplastic; TrEMBL-Plants: tr|I3SUX8|I3SUX8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253300 LjG1.1_chr1 60753931 60755754 -
2 domain predictions
1 GO term
LotjaGi3g1v0007500.1
n.a. Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500 LjG1.1_chr3 881059 886744 +
2 domain predictions
1 GO term
LotjaGi3g1v0007500.2
n.a. Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|G7II90|G7II90_MEDTR Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500 LjG1.1_chr3 881102 886920 +
2 domain predictions
1 GO term
LotjaGi3g1v0007500.3
n.a. Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.1 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500 LjG1.1_chr3 881254 885059 +
2 domain predictions
1 GO term
LotjaGi3g1v0293000.1
n.a. DNA topoisomerase 6 subunit B; TAIR: AT3G20780.1 topoisomerase 6 subunit B; Swiss-Prot: sp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B; TrEMBL-Plants: tr|I1M541|I1M541_SOYBN DNA topoisomerase 6 subunit B; Found in the gene: LotjaGi3g1v0293000 LjG1.1_chr3 59696178 59702929 -
2 domain predictions
1 GO term
LotjaGi3g1v0544900.1
n.a. 30S ribosomal protein S13, putative; TAIR: AT1G77750.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|Q8LPW2|RT13_SOYBN Small ribosomal subunit protein S13, mitochondrial; TrEMBL-Plants: tr|G7JF11|G7JF11_MEDTR Ribosomal protein S13P/S18e; Found in the gene: LotjaGi3g1v0544900 LjG1.1_chr3 96097502 96098380 -
2 domain predictions
1 GO term
LotjaGi5g1v0287800.1
n.a. 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0287800 LjG1.1_chr5 60478139 60480454 +
2 domain predictions
1 GO term
LotjaGi5g1v0290300.1
n.a. 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0290300 LjG1.1_chr5 60687721 60689873 -
2 domain predictions
1 GO term
LotjaGi5g1v0290300.2
n.a. 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0290300 LjG1.1_chr5 60688240 60689556 -
2 domain predictions
1 GO term