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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0290300 |
| Transcript ID | LotjaGi5g1v0290300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0290300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60687721..60689873) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAATATAGGAAACCCTTTTTCTGATGGTTTGAGGTTTAAGCTTGAGACAGAGAGAAGAAGAGCCGCAGTGCCGCCGC GCCAATCTACTCAGAGCAGCAATCGTTCTCTGAATCTCTGCCTTCAACATGGTATGTCGATGTTCTCTTTCCCTCTCTTT CTCCTGTCTCTGCTTCTCTGATGGTTTGGCATATGAAACTTCAGTTTTATTTATTTTTCATTTTTGTTTGAATGATCCTG AAAAACGTCAAGGTTTTTAGCTTGTGATTTGAAATCAACGATTTTGAAACCGACCCATGTCGTTTCTATGATCATATATG GTGTAATGATTCTCAAATTTAATTTTTGATTGATTTTGGGTGATGGGGGTTTGCAGTCTCTTGTGGCGAACGAGGATTTC CAGCACATTCTGCGTGTGTTGAATACCAACGTTGATGGGAAACAGAAGATCATGTTTGCTCTGACCTCCATCAAGGGTAT TGGAAGGAGATTCGCCAACATCTGTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGTAAAAAGCCTTTGAACTTTTTT GATTGCAAATTTGCGTGATGGGTATTTTGTTGAAATGAATGGTTTTTGATGTTGTTGGCAGAGCTGGTGAGTTGAGTGCT GCGGAATTGGACAATGTGATGACTGTTGTTGCCAATCCTAAGCAATTCAAGATCCCAGATTGGTTCCTCAACAGGAAGAA GGACTACAAGGATGGCAAGTACCATCAGGTTGTCTCCAATGCCCTCGACATGAAGCTCAGGGATGATTTGGAGAGGCTCA AGAAAATCAGGTGATTAACATTTGTTGGTTTCATGGAAGTAATTGTTTAACTGAAAGCCTGGAACTAATTCACTATTAAC TTTGTGATTGTTTGATCATTGATGATATTGCCAATCAAGCTATTTAATCTTAATTATATGTTTGTGATACTGATTTATCT TAACAAAACATTCCCTTCTCGCAAACTGTTGATTTCTAAACTTTTGCATACTTACTTTAGAAGTGTTTTTAAATGACAAT CATGGGATCAGCGTGAATAAAACAACCCATTACCCCATTGCTCTAACATATATTTTAAGGAGACATATATGAACAATGTT GTATGTGTAGCTTATATCTTTTCAATCATCAAAGATATCATAAAGTCGCTAAGGTATCAAATGATGTGTTTGAGAGTAAG TACATGGAACATCATTGTCTCTTGAACTCTTATGCATTGTTTTCAAAGGTTAGCTTAAATGAAATGCATTACTCATTAAA TTGCTGAAAGATTGTTAAACCAAACGAAAGCGTAGATACATGTTATCATGCTAATGTTGTGCTTTGAGCCTATTGATATA TTGCACCCTATGAATTTGATTTGTATGCCTTCAACACTGTTTGCTCGTCAGGGTTTATTTGGTTTCATTGGTAGAACTAT ATGGACCTTGATTTTGTGCAATGTTGTCAACACAGGACCTTGGTTAGTGAAAAATAAGATTGCAACCTGACATTAAGTTT CAATGCAGGAATCATCGAGGTTTGAGACACTACTGGGGTCTTCGAGTGCGTGGCCAGCATACCAAGACTACTGGTCGTAG GGGTAAAACGGTTGGTGTCTCAAAGAAGCGCTGAGTTCTCATTTCCTATATTTTTCTTTCTTTTTGTTTCGGAAGAGTGA GATGTGTTGTTTGGACAAAATTTTATTTTGATAATGCATCCGGATTTTGTTGAAATTGAATGTGGATTGTGGTCAGGTTT GTTGATGTGATTTCTATATAGACGTGTTGTTTTTAAATCTTTTTGTGATGGAAGCTATTTTCGTTTCAATTAACTGTCTA TGGCCAAATCTAAAGCAAGATTAGTGTTGATTACTCCCTCGTTTGATTATCAAATTGTTTCATGTTCTACTGCCTAGTAT AAGGAGTATGAGGTTGTCCGTCATGGGTGAGCTTCTTTATAAGCTCTTATGGAAAAGAGTTTTTTTTATTGAAGTACTCA ATCAAAAGCTACTTTTAGATGAATTATTGTCTTTGTACAAACATGAGTAATTGTTCATTCTAATTTCCATGAATGTGGTA AACACTTTTATTTTATGAAAGTACTAAAAGGGCATGTTTTAAAGGTTCATATGCCTAAATACTAATATTGGAA
CDS sequence (LotjaGi5g1v0290300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTTGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGTTGAATACCAACGTTGATGGGAAACAGAAGATCAT GTTTGCTCTGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCTGTTGCAAGAAGGCTGATGTCGACATGAACA AGAGAGCTGGTGAGTTGAGTGCTGCGGAATTGGACAATGTGATGACTGTTGTTGCCAATCCTAAGCAATTCAAGATCCCA GATTGGTTCCTCAACAGGAAGAAGGACTACAAGGATGGCAAGTACCATCAGGTTGTCTCCAATGCCCTCGACATGAAGCT CAGGGATGATTTGGAGAGGCTCAAGAAAATCAGGAATCATCGAGGTTTGAGACACTACTGGGGTCTTCGAGTGCGTGGCC AGCATACCAAGACTACTGGTCGTAGGGGTAAAACGGTTGGTGTCTCAAAGAAGCGCTGA
Protein sequence (LotjaGi5g1v0290300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNVMTVVANPKQFKIP DWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 5.8E-137 | – | |
| PANTHER | 1 | 152 | 152 | 5.8E-137 | – | |
| Gene3D | 1 | 80 | 80 | 1.9E-37 | – | |
| PIRSF | 4 | 152 | 149 | 1.6E-39 | ||
| Hamap | 12 | 152 | 141 | 22.298 | ||
| SUPERFAMILY | 13 | 148 | 136 | 1.65E-35 | ||
| Pfam | 14 | 142 | 129 | 5.6E-56 | ||
| ProSiteProfiles | 15 | 145 | 131 | 33.974 | ||
| Gene3D | 92 | 142 | 51 | 1.0E-27 | ||
| ProSitePatterns | 121 | 134 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0290300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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