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SSF46946

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
Lj1g3v0762230.1
– 30S ribosomal protein S13 [Medicago truncatula] gi|357461657|ref|XP_003601110.1|
Domains
14
Lj3g3v0044230.1
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502080701|ref|XP_004486650.1|
Domains
18
Lj3g3v0044230.2
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502080698|ref|XP_004486649.1|
Domains
18
Lj5g3v1914120.1
– PREDICTED: 40S ribosomal protein S18-like [Cicer arietinum] gi|502118906|ref|XP_004496437.1|
Domains
7
Lj5g3v1914120.2
– PREDICTED: 40S ribosomal protein S18-like [Cicer arietinum] gi|502118906|ref|XP_004496437.1|
Domains
14
Lj5g3v1949690.1
– PREDICTED: 40S ribosomal protein S18-like [Glycine max] gi|356499364|ref|XP_003518511.1|
Domains
14
LotjaGi1g1v0253300.1
– 30S ribosomal protein S13; TAIR: AT5G14320.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P42732|RR13_ARATH 30S ribosomal protein S13, chloroplastic; TrEMBL-Plants: tr|I3SUX8|I3SUX8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253300
Domains
15
LotjaGi3g1v0007500.1
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
Domains
19
LotjaGi3g1v0007500.2
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|G7II90|G7II90_MEDTR Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
Domains
19
LotjaGi3g1v0007500.3
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.1 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
Domains
18
LotjaGi3g1v0293000.1
– DNA topoisomerase 6 subunit B; TAIR: AT3G20780.1 topoisomerase 6 subunit B; Swiss-Prot: sp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B; TrEMBL-Plants: tr|I1M541|I1M541_SOYBN DNA topoisomerase 6 subunit B; Found in the gene: LotjaGi3g1v0293000
Domains
21
LotjaGi3g1v0544900.1
– 30S ribosomal protein S13, putative; TAIR: AT1G77750.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|Q8LPW2|RT13_SOYBN Small ribosomal subunit protein S13, mitochondrial; TrEMBL-Plants: tr|G7JF11|G7JF11_MEDTR Ribosomal protein S13P/S18e; Found in the gene: LotjaGi3g1v0544900
Domains
11
LotjaGi5g1v0287800.1
– 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0287800
Domains
14
LotjaGi5g1v0290300.1
– 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0290300
Domains
14
LotjaGi5g1v0290300.2
– 30S ribosomal protein S13; TAIR: AT1G22780.1 Ribosomal protein S13/S18 family; Swiss-Prot: sp|P34788|RS18_ARATH 40S ribosomal protein S18; TrEMBL-Plants: tr|I3SSR0|I3SSR0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0290300
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF46946 SUPERFAMILY 1 6.67