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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0293000 |
| Transcript ID | LotjaGi3g1v0293000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA topoisomerase 6 subunit B; TAIR: AT3G20780.1 topoisomerase 6 subunit B; Swiss-Prot: sp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B; TrEMBL-Plants: tr|I1M541|I1M541_SOYBN DNA topoisomerase 6 subunit B; Found in the gene: LotjaGi3g1v0293000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59696178..59702929) extracted from Lotus japonicus Gifu genome v1.2.
CGGAAACTGTGGAATAAGGATGCGTTGTGTTGGCGGGAAATAGCAATGAAATTTACTTCAGACATATTAGATGCAACCCA TCATCGTGGATCTTAGCCGTCCAAATATCACGCTCCGGCGATTGATTATCAGCGAAAAACATCGGCCGTTGATCTGACGA ATCCTCTTGGCAAATAACCACAGCAGCGTGATCCGCAATGCAGATGATAGCACTAGAGCGCACGCGAAAAGCAAAGCCTT ATTCTGTTGTTCAATTCATCTCAGAAAACCTAGCTCTGGGTGCAGAAGAAGCTTGCTGAATCGAAGTTGAAACCTGCTTC TGAATCTGAACTCAGAAGAGAAGAGAAGAGAAGAGCTATTCAAGATTTCAAGGTGAAATTTCCATGGATGGAGGAGGGAG TAGCAGTGAAAGCCCAATCAAAGCCAAGAAATCCAAGTCCAAAACCCCTCGAAAACCAAAAGAAACTATTCTGAAGCAGA GTCTCTATCTCTCTCTCTCTCTCTCTCTCTCGCTCTCGTTGTACTCTCAATTTTCGTAACCTTCATCTTTCAACTAATTT GTTTTTTTTTTTGTTTTGATTTGCAGAATCACCTGCTGAGTTCTTCGCAGAGAACAAGAACATCGCAGGATTTGATAATG TAAGCATAATTCTGCTGTAATGTGTTTGATTTTGCACATTTCTCTGAAATTTGATGGATTTTATTACTTCAGGCTGGGAA ATCTCTTTACACAACAGTTAGGGAGCTTGTGGAGAACTCACTTGACTCTGCGGAATCGATATCGGTGCTTCCCGTGGTCG AAGTAACTATGTAAGTGTGCAATTAAGATGATGAACGAGTAAATGAGCCTTTGCTGTGAAGTGAGTTGGATAAATGATTT ATTTCATGTTTGCCAACTTGGATTTGCAGTGAGGAGATAAACAGAAGCAAATTTAATTCTATGATTGGTCTTGTTGATCG CGAACGTGTTGATGCGGCATTGTATGACGATTATGAAACTGAAAAGGCTCGTGAGGTGTGTTTAATTTTACTTTGTTATG TTGGTTGATGTACTGAGATTATACTAATCTGGATGAAACTCTATGATTGCACTTGAGTGGTGTGAATTGTTAATTTGGTT ATAGAAACAAAAACTAGAAATTATGATCTTTGATTTGTGGATACAACTTCTTGTAGTGAATAGGCTATGTAACATTGAAG GTTATCTGTATAGGTTTCTATCTCTCTTACATCAATATTTCGTTCAATGTAGAAACGATTAGCAAAAGAGGCTCGTGCTC AAGAAATACAAGCAAAGAACGCTTCCCTTGGAAAGAAGGGAAAAGAGGCTTCAGCTACAAAGGGTATCAAGGGTCGAGGG GAGGCTTCGTTTTACAGAGTTACATGCAAGGTGCGTGTGGTTTTTGCCTTAGGCCTTCATTTATGGCACTGTATTGATGT GCCTTGTCTTGTGCTACCTCTCATCCGGTCAGCAAAAGTGTTTGATCTGGTTGTCCAATTTGAAAGATTTTTCCCTCTAT ATGTGGTTATCAGTTGCATTCCTGTAAATGTACTGTAGACAGTCTCATGCTAGTTTCTCATTTCAGGATAATGGAAAAGG AATGCCACATGATGACATCCCAGATATGTTTGGCCGAGGTCAGTCAGTCAGTTAACTGTGAATTAACATTTATTTAGATA TTTCAGCAGTTATTGTTGTTGATAGGGACTAGTAACCTCACTTGCTGTAAGCTTATCTATTCATGCAGTTTTGTCTGGTA CAAAATATGGCCTGAAGCAGACGCGGGGAAAGTTTGGCCTTGGCGCGAAAATGGTATTTGCAACATGCACTAGTTTAAAT ATTTCTTTCCCTCTTTGTTTTTGTTTAATAACTCTGGTGATTAACTTGTAACAGCTTCCGATCGAGATAAATACTGGTTT CAGTTGGTCTTATCTTTACTTTTCATGTATGCAGGCATTAATATGGTCTAAAATGAGTACTGGGCTTCCTATTGAGATCT CGTCATCAATGAGAAAACAAAATTATATTTCATTTTGCCGGCTGGATATTGACATTCATAAGTATGATGTTAATCATTAT AATAAATTGATATTTAAACTCCTCCAAATAACAAATGCTTTGACTTTCAGGAATATTCCTCATGTACATCTACATGAAAA ACGAGAGAACAACGAGCACTGGCATGGAGCTGAAATTCAAGTTGTTATAGAGGGGAACTGGACAACTTACCGTGTATGTA ATGCTTATTGGGTGCAATTTTAATAATTTCACACAAGCTCCAGATATAATTGAGTGGCTCCATTATCCAAAATACACTGT TTTCATTGATATAAGCTCCTTTGTTGACATTTGCAGTCGAAAATACTGCACTACATGCGGCAAATGGCTGTCATCACCCC TTATGCACAGTTTGTGTTTAAATTTATGTCAGATGCCCCTGAGTATGTATATGTATATATCTATAGTCAGATTATCCCTC CAAGAACAACAATGCACAATCCTCTTACACTAGCTATTCTCTTTGGCAGCAAGAATGTCACTGTAAGCTTTGCTCGCAGA ACAGATGTAATGCCACCCATTCCTCTAGAGACAAAGCATCATCCATCCTCTGTTGATTTGCTGCTAATTAAACGACTTAT TGCTGAAACTTCGAAGCAAAACCTTGTGCAGTTTCTTCAGCATGAATTTGTGAATATCAGTAAACCCTATGCTGAAAGAT TGATAGGTCAGGAAAATTATTATTTAATAAATTATTTGTTAGACCTTCTTTGTGCTTCTTATTGAGAACATATTCGTTCA GTTCTTTAAAAGAACTATTTCGCATGGTATTTATGAGCTCCAGTTAAGTGTTTGAATGCAATCACGCATCAAGTTGAACT AGTGAAGCTGGTATTTGATTAGGCACAAAGGTAGATAATGGTTATTGTGAGAGAGAAGAGGTATATTCAAACATGGGCTG ATTAAAAGCCCCTCTCCTTATTTTTATATTGACTCTTCTCTTTACAAATGAGTGATAAATTAAGTTGCCTGGGAAGCTCG GTTATATGTCGATGTTATTGTTGCTGTGGCTCATTGATAGGACAAGAACTAGAAAGAGAGGGAAAAGGGAAGGAGAACAT AGAGAATAGAGGAAACAGAGGATATATTATTCGACAACATATCAATTACAATGGTGGACTCTACTTATATAGGCACACTA ACTAACTCCCTAAATGATGTGTAACACTCATAAAGGAATAGTTCGGATTGCCACCGAAATTACAGTAAATTAATTGGAAA GATTCATTTTTCCTGCGATTAGATGAGTGTTATATTTACATGGTTCAATGTGACACCAATCTGTTATCCACTGGAGTCTT TATCTTTTTCCCTTTTAGGAGAATTGGGTGCTGACTTCAACTCAAAAATGGCTGTGAAGTCTCTTACTTCGCAGCAAATA GTACGCATTCATCAGTTGTTTCGTCAAGCCAAGTTTGATGATCCTAGTGGTCATGTAAGTAGTCTGAGTCTTTATTATGA GTCCCTTCTCTATATATTTTTCCATTATTATTTTTTCATTGTATATTCCTGCTTTTGTCATTTCACATATTTTTAATACC TTTTTTCAGTGTCTTAGCCCTGCTGGAGAATACAATCTTCGACTAGGAATTATAAAAGAGCTACACCCAGACATGGTTGC TACCTACTCAGGCAGGTTGTAGTTCAATGTCATAGTTTTATTAGATCTTTCTCCTACCTCAAATGACTGCTTCTTGGAAA TTCTACAAGTCTCAATTATCATCATAAATATATAGCTTACTTGTTATCTGATCTTCCTGACTTGTTTGTTAGAACTTACA AGTTCTAAAGGGTCTATGTATGGCTCTATTTTAGTGGCCCATTTGAGATTTTTTAATGTTGGTTATGTTATTGGCTTGTT GGTAATAGATAATTCATAATGCTTAAAAGTTAGTTTCCTATGTTATTACTGCACAGTGCTCAAGTTTTTGAAGGCCATCC ATTCATTGTGGAAGCTGGAGTCAGTGTAGGCGGAAAAGATGTCAAGCAAGTTAAGTTTCGCTTCCCATGATATTTACATT AGATAATAATTTCATTCCGTGCGTGTTAAAATTATCAATTTATCTGAAAGAAATAGTTGGAGATGATTAATTACTATGAT TGTGCCATTGTGGTGATAAGCACAGAGAAAAATGTAAAATGGAATGGGAAAATCTTTTGTTGTATACTATATCCAACGAA TTGGTCTTGAAGAGATGTTTTTATGTTATATTTCCTCGTTTTTTATGCCTTAGCAAGCTATCTAAAGTTTGACTGTGATA GGAACTGAGAAGCAGAGTGTATTTCTAGGAAAAGCTCAGAGACTAGCTCTGAGGAATTAGGGAAATTACAGAATGCAAAA GAAAACAGTAAAGTAAATCAGAGAGTCAGAGAAGAATGTTCTCTGCCCTTGGCACAAGTCACCCAAATCACCCAATGATT GCCTAATCCCTATCCTCTCTCCCCCCCTTCTTCATATTCCTCACCCTGCCCTCTGGTTCCCGTATCTTTTCCCATCTCTC TCGTCCACGTGTCCAATTCACTAGGATCCCTCTAACAGAATTATTTCCACTCACTTCTCCCCCCTACCCATTTTAGTATT CTTCCTTCTATACACTTTCCAAGGAGGCCCTTGCGCAGGTCCATCAGATTGCCTCCGTGGTTGTAAATTAGGTGATGTAG GGTGATACCTCATCACGCTTTTGAAAACTGGGTGATGTTAAGAGCTAGTTATAAAGTGACGTTTCATGCTGTTCTTAAAC ATTGCTAATGGCTTTTAAGTAACATAATATTGAATACTTGTTTCCAGGGTCTGAATATATTTCGATTTGCCAATAGAATT CCATTACTTTTTGAGCAAGGTGCTGATGTTGTCACCAGAACTGCACTTAAGAGAATCAAGTAAGTGTGCACAGAAGCATG TGGTTTCCTCTTGACTTTCTGATTTTGGGGTGAGGTGACAGAGTAAGGTCAATAAATTGCTTTACAAATTGTCTGGCAAT TACAACACAATAATAACTTATGAAATATTACTAAATACCTTTTCAGTTGGAGTAGTTACAAAATCAACCAGATACAAGAT AAGATTGGTGTCTTTGTGAGCATTGTGAGCACCAAAATCCCGTTTAAAGGAACTGGAAAAGAATATATTGGAGATGACAT AACCGAGATTGCTTCTGCTGTCAAGGTCCAGAGTTCTCAATACAATAACATTTAATTTTATCAATGTTAAGTAAGCTAAC AGTATTATTTTTCTCCAATCTCCAGTCTGCTATTCAGCAGTGTTGCATCCAATTAAAATCAAAGATTCTGAAAAAGATGC AGGCCCGTGAGCAGCAGGAGAGGAAACGAAATCTAAACAGGTAGACCTAAGTTTTTGTTTGTCCCTCATGATTTCAGGAA TCAACTAGATGATGCTGCACTTGCTTTTTTCTTGGTATGACAAATTATGATTCCTACTGATTGGCAGGTACATTCCTGAC GCTTCTAGCGCAATATACAATATTTTGAATACGACTCCGTTACATGCATCAAAGAAGCTTCGTTCTGGTGGTGATGAGGA AGAATTAATGAGGAAAGTCTCAGAGAATTTGATTACTAAAGAAACGTTGATTGAAAAGCTGGCAAAATATGTTGAACAGG TATGCTCTTATATAGTTATATTTTTCCTTGGTGATCAAAATCTGTTCTTTTGGTCCAATGTTCAAACCAGGATAACTCAA CCGGACTGACAAGTAAATTGCTCCTGAGAAACAGCTCTACTTGTTTGTCATGTGAACATATCACCTTAAATTGAAATCTA GAACATTTAGTTTTGTGGTAGCTAATGTAATATGCAATGGGTAGCTTGAAGGGCTTCAGAATTAGCCTAAAAACTTTCTA CAAGAAGACTTTTTTATATGACCAACATAAACTTACCTCTTGTTCATGAAATTTTGTTACAATTGGGATTATGCTCTTAA CTGCTCAGTCTGTGTTTGGATATTTTCAACATGAACAGACTTTTATTTCAATCCGTAAGTATAGTTTCATTCACTTTTTG TTTCGAAGTGTGCTAATGTTTGTTTGTACCGTGACAATGGGTATTCAAGCATAGACATAACTTTTCTTTAAGTTCATCTT TGAGAGAAACAATTTGAAATTGGGATAGTTCTTACTAAAACACCAAATGGAGGCCTTATTCAATGGCCTCTAGGATTGTG TCATGTCCTCACTAAGAAACGAAGCAAAAGAGACGTGCTTGAATTTTGAATTTGATGATGAAATTTTGTTATCTGTATAT GCAGGTGGACTATGAAATGGCATTGGAGTATGCCACCCAAAGTGGAGTAAGCGAGCAACCCAGAGAAACAATATACATAC AATCACTGGAAGCTGAAAATAAGATAGTTGACTTGCATGCTCCATTTTTTGTTTTCAGAGTCGTACAGTAGATTTAGGAA ATTGATTTGAAATTAAAAAGAAACGAAAGTTAGGTTTATTTTCCAAATTAAATTTATATCACCTGTGATGAAGGAACGAT TATTGTAACTATTCTTTTTATTTGTAAGAAATGCCAATAAGATTAATAAGATATTGCTGTGGGTTCTCAATTATTGCTTA CCCGTACATCTACACTGCAGGAATTTGTAAGCACGGATGATGAAAACTTCAAAGATATGTTTATTTGCCATTGAAAACAA AAGCTGCGTTTATTTGATTAGTCGAGACACAG
CDS sequence (LotjaGi3g1v0293000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGAGGAGGGAGTAGCAGTGAAAGCCCAATCAAAGCCAAGAAATCCAAGTCCAAAACCCCTCGAAAACCAAAAGA AACTATTCTGAAGCAGAAATCACCTGCTGAGTTCTTCGCAGAGAACAAGAACATCGCAGGATTTGATAATGCTGGGAAAT CTCTTTACACAACAGTTAGGGAGCTTGTGGAGAACTCACTTGACTCTGCGGAATCGATATCGGTGCTTCCCGTGGTCGAA GTAACTATTGAGGAGATAAACAGAAGCAAATTTAATTCTATGATTGGTCTTGTTGATCGCGAACGTGTTGATGCGGCATT GTATGACGATTATGAAACTGAAAAGGCTCGTGAGAAACGATTAGCAAAAGAGGCTCGTGCTCAAGAAATACAAGCAAAGA ACGCTTCCCTTGGAAAGAAGGGAAAAGAGGCTTCAGCTACAAAGGGTATCAAGGGTCGAGGGGAGGCTTCGTTTTACAGA GTTACATGCAAGGATAATGGAAAAGGAATGCCACATGATGACATCCCAGATATGTTTGGCCGAGTTTTGTCTGGTACAAA ATATGGCCTGAAGCAGACGCGGGGAAAGTTTGGCCTTGGCGCGAAAATGGCATTAATATGGTCTAAAATGAGTACTGGGC TTCCTATTGAGATCTCGTCATCAATGAGAAAACAAAATTATATTTCATTTTGCCGGCTGGATATTGACATTCATAAGAAT ATTCCTCATGTACATCTACATGAAAAACGAGAGAACAACGAGCACTGGCATGGAGCTGAAATTCAAGTTGTTATAGAGGG GAACTGGACAACTTACCGTTCGAAAATACTGCACTACATGCGGCAAATGGCTGTCATCACCCCTTATGCACAGTTTGTGT TTAAATTTATGTCAGATGCCCCTGACAAGAATGTCACTGTAAGCTTTGCTCGCAGAACAGATGTAATGCCACCCATTCCT CTAGAGACAAAGCATCATCCATCCTCTGTTGATTTGCTGCTAATTAAACGACTTATTGCTGAAACTTCGAAGCAAAACCT TGTGCAGTTTCTTCAGCATGAATTTGTGAATATCAGTAAACCCTATGCTGAAAGATTGATAGGAGAATTGGGTGCTGACT TCAACTCAAAAATGGCTGTGAAGTCTCTTACTTCGCAGCAAATAGTACGCATTCATCAGTTGTTTCGTCAAGCCAAGTTT GATGATCCTAGTGGTCATTGTCTTAGCCCTGCTGGAGAATACAATCTTCGACTAGGAATTATAAAAGAGCTACACCCAGA CATGGTTGCTACCTACTCAGGCAGTGCTCAAGTTTTTGAAGGCCATCCATTCATTGTGGAAGCTGGAGTCAGTGTAGGCG GAAAAGATGTCAAGCAAGGTCTGAATATATTTCGATTTGCCAATAGAATTCCATTACTTTTTGAGCAAGGTGCTGATGTT GTCACCAGAACTGCACTTAAGAGAATCAATTGGAGTAGTTACAAAATCAACCAGATACAAGATAAGATTGGTGTCTTTGT GAGCATTGTGAGCACCAAAATCCCGTTTAAAGGAACTGGAAAAGAATATATTGGAGATGACATAACCGAGATTGCTTCTG CTGTCAAGTCTGCTATTCAGCAGTGTTGCATCCAATTAAAATCAAAGATTCTGAAAAAGATGCAGGCCCGTGAGCAGCAG GAGAGGAAACGAAATCTAAACAGGTACATTCCTGACGCTTCTAGCGCAATATACAATATTTTGAATACGACTCCGTTACA TGCATCAAAGAAGCTTCGTTCTGGTGGTGATGAGGAAGAATTAATGAGGAAAGTCTCAGAGAATTTGATTACTAAAGAAA CGTTGATTGAAAAGCTGGCAAAATATGTTGAACAGGTGGACTATGAAATGGCATTGGAGTATGCCACCCAAAGTGGAGTA AGCGAGCAACCCAGAGAAACAATATACATACAATCACTGGAAGCTGAAAATAAGATAGTTGACTTGCATGCTCCATTTTT TGTTTTCAGAGTCGTACAGTAG
Protein sequence (LotjaGi3g1v0293000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGGGSSSESPIKAKKSKSKTPRKPKETILKQKSPAEFFAENKNIAGFDNAGKSLYTTVRELVENSLDSAESISVLPVVE VTIEEINRSKFNSMIGLVDRERVDAALYDDYETEKAREKRLAKEARAQEIQAKNASLGKKGKEASATKGIKGRGEASFYR VTCKDNGKGMPHDDIPDMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRKQNYISFCRLDIDIHKN IPHVHLHEKRENNEHWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFVFKFMSDAPDKNVTVSFARRTDVMPPIP LETKHHPSSVDLLLIKRLIAETSKQNLVQFLQHEFVNISKPYAERLIGELGADFNSKMAVKSLTSQQIVRIHQLFRQAKF DDPSGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGADV VTRTALKRINWSSYKINQIQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKSAIQQCCIQLKSKILKKMQAREQQ ERKRNLNRYIPDASSAIYNILNTTPLHASKKLRSGGDEEELMRKVSENLITKETLIEKLAKYVEQVDYEMALEYATQSGV SEQPRETIYIQSLEAENKIVDLHAPFFVFRVVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 20 | 590 | 571 | 6.0E-185 | – | |
| PANTHER | 20 | 590 | 571 | 6.0E-185 | ||
| Hamap | 27 | 609 | 583 | 28.209 | ||
| CDD | 36 | 306 | 271 | 2.58548E-91 | – | |
| Pfam | 53 | 226 | 174 | 3.1E-6 | ||
| Coils | 108 | 128 | 21 | - | – | |
| SUPERFAMILY | 154 | 295 | 142 | 3.93E-19 | ||
| Gene3D | 324 | 401 | 78 | 1.4E-9 | – | |
| SUPERFAMILY | 325 | 397 | 73 | 3.65E-6 | ||
| Gene3D | 402 | 628 | 227 | 1.9E-69 | ||
| SUPERFAMILY | 402 | 563 | 162 | 1.37E-50 | ||
| Pfam | 403 | 562 | 160 | 1.0E-56 | ||
| CDD | 412 | 562 | 151 | 3.67618E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of LotjaGi3g1v0293000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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