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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0036700 |
| Transcript ID | LotjaGi1g1v0036700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5111233..5114009) extracted from Lotus japonicus Gifu genome v1.2.
TAACCTTTGCAATAATCGAGAATATTTTTATTTAAAAATGTGCCTGATTAGAAGTTATTAAAAATTACAAAAGAACCTCT GAGTGAATTCGCAAGGTTCTTCCCATTCATTTGTATATATTGATGCTACCAACATTCACCTCCAACATCACACATTGCTT TCTTCTCTGACAAAGCTCTCACCTTGTGGCGTCAAACTCTTCAAGGTACTTTTCCAATTCTTAATCTCTCATTTCTTCAA TTAGAAATGAAATTTTGTCATTCAAAGTTCATGATTTTAATTTCAGTGTTTGATTTATGAATGTTTCAACTAAAACCCTT TAAGTTCTCACAAAATTAAGAAAAATGAAAGGAAGAAAAAGAAACCCTTTTCCCTTTTTTGTGGTATTTGCATGCTCCTT AGTCCTCAGTCTCTATGTTGATATGAATAGCTTGTATTGTTCTTATTTATGCTTTTCCTGATTGCACATCAGTGTGGCCA TGAAAAGAAGAAAGGGTTCACTTGGCTCTGCTAGGGCTACCAGAAGAAGCAAAAGGGTAGCAGTTGCAGAGAAAGTTGAT GATGATGTGTCAGAAAGTCAACAACTTGGGGTTTCTTTTGATGATATTCCATCCCACATCACTGCCCACATTCTAGGAAG ACTTCCTGTTAAGTCTGTTTTCATTTGTAAATCTGTTTGCAGAAGATGGAAAGCTGTGATCTCAGACCCACATTTTCCCA AATTGCACTTTCAGCATGCCTCAGCTGGTCTCATGATTCTGGCCACGGATAGGAAACCGACAAGAAACCTGTACCTGCTG GAGTGTGAGTCTGAAAAGATAAAAAATGATGATATTGGCCAATTCTGTTGCTGCGAGGACTCTTATATTAAACCCGAATG CAACCGTCACTTTAAACTTGAGCATAAACTCAAGGTTCCTCTAGATTTGGACAAAAGTGATGAGGCTAAGAAAAGGGGTG GACAAAGTGATGATAATAAGTTTGCTGTGGTAAATTCTTGTAATGGCTTTCTTTGCTTGTCTGATGTGAAAAGAAACTGC TTTGTTGTTTGCAATCCAGTTACAGGTGAGTTTATAAGACTTCCAGAGCCACCTAGAATTGATAGAACTGGTTATACCGT GCGCCCTGAATTAAAAGTGGGTTTTGGTTTCCAACCCAAAACTAATGAATATAAGGTGGTAAGAATAATATTCAAGGGAC AGCGCGTGTGGCGGGCGACTCAGAAAATTATGGGAGTTGAAATTCACACACTAGGAACTTCAACATGGAGGAATGTTGAA GTTGATCCTATGCATGTTAGCCTGTATACATTTCCTACATATGTGAATGGGGCACTTTATTGGATTAGTGGTTATCACAA GAAATCATCAATATTTTGTTTTGACTTTGAAAGCGAGAGTTTCCAATCCTTCCCTTATCCTCCTCGTTCATTTGTTATTG ATATCACCATGGGAGAATATGGGGGCTCTCTTTACATATGTAATTCATCTTCCACGGGTCACATTAATATGTGGATTATG AAGAAATATGGTTTCGAAGCTTCATGGACCAATATTTTCAGCATTGATATTACGAGCAAGCCTAAAGGTGGTTTATGTTG GCCAGTAAAACACATTAAGAATGGTGGTGCAGTATTGATGTGTCATTCCAGTGATTGCTTTATCTACTATGAACCTCTAA AGTATGGATTCAAAATTTTCAAGATTCGTGGGGCAGCACGATATGTTACGGCTATTCCTCATATTCCTAGTCTTATCTCA CTAAAGGATGCTGTGAAAGGAGACAATATTGAGGTGATGAATGTCGACCCAAGGTAAGGATGTAGGTTCTATTACTTTGT TCACTAATTGAATCTAATGCTACTTTAAAAATTATAACTACTATGATATTAATTATTGTGCATCATAAGATAGATATTGA CGAGACATGTGTGAGTTTCCCATGTTGCTGCTTGTGTTTTAATTTCCTTTTCAGTCCTTCTGTTTGGGACATTGGGAAGA GAAACTTGTTGCTGTGTCAATCTGTTACTTTTAGTATTAAACTATATGGGGAACTTTTTTATACATCTTATGATTTCAGT GTTTCAATATGATATATCTACAATATTCGTAATACTTGGATCTTCCAGTTTCTGAAAAAAAAATCCTTGTAGATAGAATG TTGTGTTGCTAACTTTTGAACTTCAATATACCTTCCTCACTGATGGAGGAGAATATGTACAGTTGCTGTTGGATATTCTT TTGTTGGAGACCATTTTTACTTGCTGGTACCTCCAGATTTAGCCACTTTCCAGTAGCACTATTCATTAATATTGGTATCG TTTTATATAGGTGTGAAGAGTTGCAATTGCAAGAAGAAAAAGAAGTACTTTTCTTTGCTAAAGTGAATGAATTGACAAAT TTGTGCTATACATCCTCTGTTGATGAAGAATAGGTTGAAGAGTACACCTTCTAACAAGTAATTGCCTTGTAAGTTGTAAC AGGGTTATGCTATATCATAAGTTTTGGTTTTGACTGGTTGTAATTTTTGGTTTAGACTACAAAAGATATTTCTTTAATCT ATGGTTTAATGGGAAGGATTATTGCCCAGCCTTTTGATTCTCTTATATGCCATTTACATGCTTTTCTATGTTTGCGGTAT CTCCATTGATTTCCTAATTTGTGTGGATTTCGATAAAATTTAAGCAGGAAATCACAAACTCTAGCATCTGCTTTCACATT AATTACTCACTAATGTGAACATCCATCTATGAATAAAAGGATTGAATTGAATTGGAC
CDS sequence (LotjaGi1g1v0036700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGAAGAAAGGGTTCACTTGGCTCTGCTAGGGCTACCAGAAGAAGCAAAAGGGTAGCAGTTGCAGAGAAAGTTGA TGATGATGTGTCAGAAAGTCAACAACTTGGGGTTTCTTTTGATGATATTCCATCCCACATCACTGCCCACATTCTAGGAA GACTTCCTGTTAAGTCTGTTTTCATTTGTAAATCTGTTTGCAGAAGATGGAAAGCTGTGATCTCAGACCCACATTTTCCC AAATTGCACTTTCAGCATGCCTCAGCTGGTCTCATGATTCTGGCCACGGATAGGAAACCGACAAGAAACCTGTACCTGCT GGAGTGTGAGTCTGAAAAGATAAAAAATGATGATATTGGCCAATTCTGTTGCTGCGAGGACTCTTATATTAAACCCGAAT GCAACCGTCACTTTAAACTTGAGCATAAACTCAAGGTTCCTCTAGATTTGGACAAAAGTGATGAGGCTAAGAAAAGGGGT GGACAAAGTGATGATAATAAGTTTGCTGTGGTAAATTCTTGTAATGGCTTTCTTTGCTTGTCTGATGTGAAAAGAAACTG CTTTGTTGTTTGCAATCCAGTTACAGGTGAGTTTATAAGACTTCCAGAGCCACCTAGAATTGATAGAACTGGTTATACCG TGCGCCCTGAATTAAAAGTGGGTTTTGGTTTCCAACCCAAAACTAATGAATATAAGGTGGTAAGAATAATATTCAAGGGA CAGCGCGTGTGGCGGGCGACTCAGAAAATTATGGGAGTTGAAATTCACACACTAGGAACTTCAACATGGAGGAATGTTGA AGTTGATCCTATGCATGTTAGCCTGTATACATTTCCTACATATGTGAATGGGGCACTTTATTGGATTAGTGGTTATCACA AGAAATCATCAATATTTTGTTTTGACTTTGAAAGCGAGAGTTTCCAATCCTTCCCTTATCCTCCTCGTTCATTTGTTATT GATATCACCATGGGAGAATATGGGGGCTCTCTTTACATATGTAATTCATCTTCCACGGGTCACATTAATATGTGGATTAT GAAGAAATATGGTTTCGAAGCTTCATGGACCAATATTTTCAGCATTGATATTACGAGCAAGCCTAAAGGTGGTTTATGTT GGCCAGTAAAACACATTAAGAATGGTGGTGCAGTATTGATGTGTCATTCCAGTGATTGCTTTATCTACTATGAACCTCTA AAGTATGGATTCAAAATTTTCAAGATTCGTGGGGCAGCACGATATGTTACGGCTATTCCTCATATTCCTAGTCTTATCTC ACTAAAGGATGCTGTGAAAGGAGACAATATTGAGGTGATGAATGTCGACCCAAGGTGTGAAGAGTTGCAATTGCAAGAAG AAAAAGAAGTACTTTTCTTTGCTAAAGTGAATGAATTGACAAATTTGTGCTATACATCCTCTGTTGATGAAGAATAG
Protein sequence (LotjaGi1g1v0036700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRRKGSLGSARATRRSKRVAVAEKVDDDVSESQQLGVSFDDIPSHITAHILGRLPVKSVFICKSVCRRWKAVISDPHFP KLHFQHASAGLMILATDRKPTRNLYLLECESEKIKNDDIGQFCCCEDSYIKPECNRHFKLEHKLKVPLDLDKSDEAKKRG GQSDDNKFAVVNSCNGFLCLSDVKRNCFVVCNPVTGEFIRLPEPPRIDRTGYTVRPELKVGFGFQPKTNEYKVVRIIFKG QRVWRATQKIMGVEIHTLGTSTWRNVEVDPMHVSLYTFPTYVNGALYWISGYHKKSSIFCFDFESESFQSFPYPPRSFVI DITMGEYGGSLYICNSSSTGHINMWIMKKYGFEASWTNIFSIDITSKPKGGLCWPVKHIKNGGAVLMCHSSDCFIYYEPL KYGFKIFKIRGAARYVTAIPHIPSLISLKDAVKGDNIEVMNVDPRCEELQLQEEKEVLFFAKVNELTNLCYTSSVDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 25 | 144 | 120 | 1.1E-8 | – | |
| ProSiteProfiles | 37 | 87 | 51 | 10.822 | ||
| Pfam | 39 | 80 | 42 | 1.3E-8 | ||
| SUPERFAMILY | 40 | 89 | 50 | 6.02E-14 | ||
| PANTHER | 41 | 367 | 327 | 1.4E-38 | – | |
| PANTHER | 41 | 367 | 327 | 1.4E-38 | – | |
| SMART | 43 | 83 | 41 | 4.7E-6 | ||
| SUPERFAMILY | 169 | 395 | 227 | 9.02E-6 | ||
| TIGRFAM | 172 | 397 | 226 | 1.7E-32 | ||
| Pfam | 281 | 365 | 85 | 7.9E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0036700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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