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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011332
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.242s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0120869.1
n.a. PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] gi|449483218|ref|XP_004156525.1| chr0 53765933 53766327 -
2 domain predictions
1 GO term
Lj1g3v0683910.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 8934391 8935359 +
2 domain predictions
1 GO term
Lj1g3v1035300.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 13002759 13005163 +
2 domain predictions
1 GO term
Lj1g3v2583440.1
n.a. PREDICTED: 50S ribosomal protein L33-like [Glycine max] gi|356552533|ref|XP_003544621.1| chr1 29850825 29851735 -
2 domain predictions
1 GO term
Lj2g3v1415010.1
n.a. Ubiquitin [Medicago truncatula] gi|357519213|ref|XP_003629895.1| chr2 22244732 22245790 -
2 domain predictions
1 GO term
Lj2g3v1988870.1
n.a. RecName: Full=60S ribosomal protein L37agi|4090257|emb|CAA10493.1| ribosomal protein L37A [Pseudotsuga menziesii] gi|6831607|sp|Q9ZRS8.1|RL37A_PSEMZ chr2 29607119 29609203 +
2 domain predictions
1 GO term
Lj3g3v0235100.1
n.a. PREDICTED: 60S ribosomal protein L37-2-like isoform 1 [Cucumis sativus] gi|449448036|ref|XP_004141772.1| chr3 1408113 1409234 +
2 domain predictions
1 GO term
Lj3g3v0599570.1
n.a. PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera] gi|225427377|ref|XP_002282974.1| chr3 6485239 6486532 +
2 domain predictions
1 GO term
Lj3g3v1557610.1
n.a. PREDICTED: 40S ribosomal protein S27-2-like [Glycine max] gi|356498613|ref|XP_003518144.1| chr3 19859215 19860032 -
2 domain predictions
1 GO term
Lj4g3v0336800.1
n.a. 60S ribosomal protein L44 [Medicago truncatula] gi|357445721|ref|XP_003593138.1| chr4 4163303 4165054 -
2 domain predictions
1 GO term
Lj4g3v0340800.1
n.a. ribosomal protein L32 [Populus alba] gi|209976916|dbj|BAG80685.1| chr4 4439700 4442238 -
2 domain predictions
1 GO term
Lj4g3v0340930.1
n.a. ribosomal protein L32 [Populus alba] gi|209976916|dbj|BAG80685.1| chr4 4464336 4470725 -
2 domain predictions
1 GO term
Lj4g3v0506850.1
n.a. PREDICTED: 50S ribosomal protein L33-like [Glycine max] gi|356552533|ref|XP_003544621.1| chr4 8469262 8472967 +
2 domain predictions
1 GO term
Lj4g3v1200900.1
n.a. 60S ribosomal protein L37aA [Hevea brasiliensis] gi|313586497|gb|ADR71259.1| chr4 17642943 17643655 +
2 domain predictions
1 GO term
Lj5g3v0790850.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr5 11384931 11386768 -
2 domain predictions
1 GO term
Lj6g3v2221950.1
n.a. 60S ribosomal protein L44 [Medicago truncatula] gi|357445721|ref|XP_003593138.1| chr6 25935427 25936402 +
2 domain predictions
1 GO term
LotjaGi1g1v0293700.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0293700 LjG1.1_chr1 71198167 71201263 +
2 domain predictions
1 GO term
LotjaGi1g1v0635900.1
n.a. 40S ribosomal protein S27; TAIR: AT3G61110.1 ribosomal protein S27; Swiss-Prot: sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2; TrEMBL-Plants: tr|W9R670|W9R670_9ROSA 40S ribosomal protein S27; Found in the gene: LotjaGi1g1v0635900 LjG1.1_chr1 119090150 119090819 +
2 domain predictions
1 GO term
LotjaGi1g1v0674100.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0674100 LjG1.1_chr1 123997277 124000362 +
2 domain predictions
1 GO term
LotjaGi2g1v0321700.1
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79647585 79651234 -
2 domain predictions
1 GO term
LotjaGi2g1v0321700.2
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79650360 79651086 -
2 domain predictions
1 GO term
LotjaGi2g1v0418300.1
n.a. 60S ribosomal protein L37a; TAIR: AT3G10950.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a; TrEMBL-Plants: tr|A0A1J7GYJ7|A0A1J7GYJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0418300 LjG1.1_chr2 91667217 91667724 +
2 domain predictions
1 GO term
LotjaGi3g1v0017600.1
n.a. Ribosomal protein L37; TAIR: AT1G52300.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2; TrEMBL-Plants: tr|I3T5Z7|I3T5Z7_LOTJA Ribosomal protein L37; Found in the gene: LotjaGi3g1v0017600 LjG1.1_chr3 1864134 1864830 +
2 domain predictions
1 GO term
LotjaGi3g1v0069900_LC.1
n.a. 60S ribosomal protein L37a; TAIR: AT3G10950.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a; TrEMBL-Plants: tr|A0A072TFU7|A0A072TFU7_MEDTR 60S ribosomal protein L37a-2; Found in the gene: LotjaGi3g1v0069900_LC LjG1.1_chr3 7612480 7615547 +
2 domain predictions
1 GO term
LotjaGi3g1v0366100.1
n.a. Ribosomal protein L37; TAIR: AT1G52300.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2; TrEMBL-Plants: tr|I3T6T0|I3T6T0_LOTJA Ribosomal protein L37; Found in the gene: LotjaGi3g1v0366100 LjG1.1_chr3 75210453 75211135 +
2 domain predictions
1 GO term
LotjaGi4g1v0032400.1
n.a. 60S ribosomal protein L44; TAIR: AT3G23390.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q96499|RL44_GOSHI 60S ribosomal protein L44; TrEMBL-Plants: tr|K7M9P7|K7M9P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0032400 LjG1.1_chr4 3966451 3969399 -
2 domain predictions
1 GO term
LotjaGi4g1v0032400.2
n.a. 60S ribosomal protein L44; TAIR: AT3G23390.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q96499|RL44_GOSHI 60S ribosomal protein L44; TrEMBL-Plants: tr|A0A068V1D2|A0A068V1D2_COFCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0032400 LjG1.1_chr4 3968682 3969298 -
2 domain predictions
1 GO term
LotjaGi4g1v0034200.1
n.a. 50S ribosomal L32; TAIR: AT1G26740.1 Ribosomal L32p protein family; Swiss-Prot: sp|Q2RTT0|RL32_RHORT 50S ribosomal protein L32; TrEMBL-Plants: tr|I3S1A7|I3S1A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0034200 LjG1.1_chr4 4162273 4168281 -
2 domain predictions
1 GO term
LotjaGi4g1v0193700.1
n.a. 60S ribosomal protein L37a; TAIR: AT3G10950.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a; TrEMBL-Plants: tr|A0A1J7GYJ7|A0A1J7GYJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0193700 LjG1.1_chr4 44629993 44632066 +
2 domain predictions
1 GO term
LotjaGi4g1v0383400.1
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|I3TAN7|I3TAN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0383400 LjG1.1_chr4 76207923 76210794 +
2 domain predictions
1 GO term
LotjaGi5g1v0045800.1
n.a. 40S ribosomal protein S27; TAIR: AT3G61110.1 ribosomal protein S27; Swiss-Prot: sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2; TrEMBL-Plants: tr|W9R670|W9R670_9ROSA 40S ribosomal protein S27; Found in the gene: LotjaGi5g1v0045800 LjG1.1_chr5 7714359 7714967 +
2 domain predictions
1 GO term
LotjaGi5g1v0099000.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi5g1v0099000 LjG1.1_chr5 17798983 17801934 -
2 domain predictions
1 GO term
LotjaGi6g1v0355300.1
n.a. 60S ribosomal protein L44; TAIR: AT3G23390.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q96499|RL44_GOSHI 60S ribosomal protein L44; TrEMBL-Plants: tr|K7M9P7|K7M9P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355300 LjG1.1_chr6 66728365 66729780 +
2 domain predictions
1 GO term