Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi4g1v0034200
Transcript ID	LotjaGi4g1v0034200.1
Lotus japonicus genome version	Gifu v1.2
Description	50S ribosomal L32; TAIR: AT1G26740.1 Ribosomal L32p protein family; Swiss-Prot: sp\|Q2RTT0\|RL32_RHORT 50S ribosomal protein L32; TrEMBL-Plants: tr\|I3S1A7\|I3S1A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0034200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:4162273..4168281) extracted from Lotus japonicus Gifu genome v1.2.

GATCGACCCAGCCTCCGCGAGCCCCTCTCCCGTAGCGGCGGACAACCACCGTGCCTGATTCTTCGCCGCCTCCACGCATG TAAGAACCACTTCCTCTCCTGAGTTTTCTCTTGATTCAATTATGCAACATTCACTTCCATTTCTTCTAATCTGTTCGCCG ATTATCTGCATTTGGAAAATTCGCAGTAGTAGATTTGTGCTGCCGCTTCGGTAAGAACCTTCAGTATTCGCCATGGCTAC GAGATTCGCGATTCTCAGGGGCAATGGGAGGAACCTTTTAGGGTTCAATAGGTTGTTTCATTCCGTGCCTCAAGCTCCTC CTTTAGTTGGGAGCATTGACATTGGAGTTCCGTCATCGCAACCGGTTTTGCCTGAGTTTACTTCCCCGAGTTTCTCTTTT GGTGATTCTATGGAGCTCATGGCTGTCCCCAAAAAGAAGGTAAGGAACCAATCTGACTTCACTGTCAATTTGGATTTCCT TAGATGTTGAATTTTACTGCTGGTGTGTCAATCATTAATGGAGTGTAGTGATTTGAGTGTGATAATTTGCACACTATATT AGCATCACCGTCGCTGTAATCGTTCTCAATATTGCATTATGAATATATTTTTGATGGTTTTGTTTTGATGCAGATTTCTA AGTCTAGAAGAGGAATTAGAAATGGACCAAAAGCTTTGAAACCTATTCATGTGCTTGTCCTGTGCAAGTAAGCTCTAGTC TGTTTCCTAATGATATTAGCTGTTATTGTTATGTTCTGGAAATATGCGATGATTTCTCTTTATTAGTTATGATAGCTTGA GTGTCGAGTATTTGGGTGAAAAACAAATTCATCATAAATTGGTTCAGTTTTCCTAATCTTTCCCCCCCGAACCGACTTTT GTAGTTATAGATATGTTGGATAGAAAAGAAAGGCTCCATGGGAGGGGCGGAGTTTCTTTATTCTCACTCAGGGACTAGGG TGAAAGACACTAATCCCTCGGCTCGTGTTAAACCATGAAGTTCGGAGTGCAATGAAACTGTTGAGTTTGCAATGAAACTG TGGAGTTTCATATTAATGTTAACAAAGTAATGTTCATTATCACGATCGCCCTTGTATTCCTGCAATCTCTTCCACCATCA GTCAAACCTGCAAATAGCAGTCAAGAAAAGAGAAGTACATGGAAGCATCCAGAGGCAGAGCTTTAGAGCAATGTTGTGAA AAACTAGATTCTACGTAGAATCGGAGAGGGGGTTCAAAATCGTATAATCGTAAATTGAATCGTAAGATTTTACCATAAAT AATAAAATAAAATAAATGGCATAGATATCTTGTAAGTCACATCATTTAACAAAATTTGGAATAAAAATTCAAAAGATTAA CATCCATATAAGTCATAATCTCAATCCAAAATCCAAAATCATAAGAGTACTAGAACATGAAATTAAAAGACGAAAAACGT AAAAACAGCATTCCAAGTCTCCAAAAGTGACCAGATTCACTAGAATCTACTAGGAATTCAATTTAGCAATAAATCCCTAA TGAGCCAATCGGGTTCATCATCATCTTCATTCTCATTTGCATCTCCATCTTCATCAGCATCAGCATCAGGAACCTCCAAA TCATCTACAACATGACTTGCACTAGCATGATCATCTTTTCCAAGATTAACCAAGTCCACTTCACCTTCAGTAACATCCAA ATCTGAGTTTTCATCATCCTCTACAATCCACTCATCATCAGATTCTAGGTCTTCAATGCTAAAATTTTGATGTTTCCTAA TCTTCTTCTTCTTAGCCAATTTTGAATTGGCCATCACAAAAATGATATCATTCATGGTCTGCTGCTTCAGGCGATTTCTT TTCTTGGTGTGGACCTAAATAATAGGTGTTAAGTGTTAGATACTAATGGAAAATTGTAATCTCTTAAAATTAAATATAAT TTAAAATCTCACTTACCATCTCAAAAGCACTCCAATTGCGCTCACAACCGGATGAGCTACAGGTTAAGCTCAATATACGA ATTGCAACTTTTTGCAACTCTGGGTGTTCATCACCATAAGACTCCCACCATTGTGCTGGCGTTTTGTTTTTAAGAGCAAG CTGAGCTATTTCACTACCAAAAAATTTTGCTTTGCTTTTGAAATCCTCAAGCTGACCATCAATTTTATTTACTTCAGCCA TGTCTCCCAATATCCTTTCCAAACAACTATATAATCCACGCTTGACTTCATAGTCCACCTTAAAAGTAGGACCATAATGC AACATCGGATTTAGATAGTAGCCAGCAGCATGTAAGGGCCTATGCAATTGATTTTCCCATCTTGCATCAATGATGTTCCA CAAAGGCATATAACTAAAGAAAGGGAAAATTTGAATTAATTTCCAAACTAACACTAATCCATATAATACATAATAAAATT GAACAGCTAAAATGAATAATAGTTAAAACTTAACATGTACCTTTTCTTAACACCAGCAAAAGCCTTTTCTATCTTTTCCT TAGCCTGATCTATTTCCTCATAGATCAACCCCATTGCTGGATTCTCATCTGAGTCCACCAAGCGCAACACTTTAAGTAGT GGAAAAGCAGCCCTAAAGCAATTCAATACATTCTTCCAAAACTGTTTATCCCTCACCAGATTTTCAACATGCTTCCCATC GTTAGTTTTTGCTAGTGGACTTAATTTCCATTGTTCGGATACAAACATCTTTTCCAAGGCCCCCTTATTATCATTCAAAC AACCCAATGATAGATAGGAAGTAGCAAAACGAGTAGCACCAGGTCTAATAAGGTCCCCTCCATTTGTAAAAAAATGGAGC TAAGAAATAAGAGAAGTTCTGGAATATATGTAAACTGCAATTTTCTTACCACTTGCAATTGTCTCTTTATGAAGTGGCAA TTTCTTCTCAAAATCCTCTTTTGCAGTAGAGATTCTTTAAATCAATGCAATGGGCTGCGCAGGGTGTCCAGTAGAGATTC TTCCTCTTTTGCATCAACAACGCCCCGGCTGCTTTGTAGTTTGCAGCATTGTCCGTGACAACTTGGACAACGTTTTCCTC TCCAACCTCCTCTACAACCTCATCTATCATCTTAAAAATCTTATCTGCAGTTTTAGTAATATTTGAGGCATCAATTGACT TCAAAAAAACAGTACCTTTAGGACTATTTACCAGAAAATTAATAATAGTCCTCCTCCTTGTATCAGTCCATCCATCTGTC ATTATAGAGCATCCCACTTTCTTCCACACAGCTCTGTGCTCTTCCACATTTTTCTTGGTCATCTCAACTTTTTGCTTCAA ATATTTCACTCTCACATCATGGTAGGATGGTGGCTTGTATCCCACACCATGTCGAGCAATTGTTTCACACATCCTCTGAA ACTCTTCACTCTTTACAACATTGAAAGATATAGCATTGTTATATAAAAATGAAGCTACCTCCATATTTGCCTCCTCCCTC AAACTCTTCTTGAAAATACTATTGATTGTTGCTTGAGATGGACCCTTTTTCTTGAAAAGAGTAGCTGCAGTCAGCACTTC TTCTTCCCGTTTCCTTTTTCCATTTTCATCAAGATCTTCATTATTACCTCCATCAATCTTCAGCAAAAGTTTATCTTGCA ACTCAACAACAGTATCAAACATTTTCTTCTTAACATCATCTGGGACAACAGGGCAAACAACAACATTCAACCTTGTGCAG CCCAAATGATGCTTAAATCTGTAAACACCCCCTGTAATAATCTTCGCACAATACTTGCATTTTATTTTTTTTGAATCTCC CTCAACTGACACTCCATGATCCCAAGCCATATCAGTGAGGGCTCCAGGAGCATTTTTTTGAACTTTAGCCTTTCCTCTAA CACATGGAACTCTACTAGGACCACCCTCATCTCCATTCCCTGTGCCACTGCCACCAGCTCCACCATTTTCAGCACCACCA GTTGCCATTGAGTGAAATAGAGATGTTGAAGAATGAAGGAAAACAGAGATATGGAAGAATGAAGGGGAAACAGATACGTT AGCACTTAGCAGAGTGAAGAGGAAGAGACCTAGAGATGGAGAATACAGAAAACTGAATGCGTGAATTCACTCTACCATGA GTGAATTATATAAGGAAATTAGAGGCATTAGTGGGTTGATTTTTAGAAATTCACAATCAGTATTAATTCTTATCAAAACC TTTCAAATTCTTATCAAAACCTTTCAAATTTGGCAGCCACAGTTAATTAGAGCTAGAATTTCGAAATCCCTTAAATGCTC TGGACGGTTGGGTTGTTTTTTCCAACAACTCAACTCTTCAGTTCCCTAATTGTAGGAACCAGTTAAAAAATTTTAAAAAA ATAGTGGAATCTTACGATTCACTACGATTTCACGATCAAAATCTTAGATTCTACGTGATTCCATCAGAAACCGATTTTAC ACGCGTTTTAACTCGGAACAGTGGTCTAAGATTTTACGATTTTGCGATAGATTTTGCAAACCATGCTTCAGAGAGCCGCC TTACTGACCCCAAACTGATAGTGTTGGGTTCTTGCTTTCCTAGTCACTCTTTGATCCTTAAATCTCACTAATTGAGATCC GTTACACATTGTTGTGCCACATCAAAACAAAAGAATATATATAGTCACTAATATGCTATAGTTTTGTCTTTAAACTGTAT GAAGCTATTTAGTCCCTAAAATTGTTTTTCTTTCTACTACTACTCAAACTATTCAGCGAAGTTAGAAATTTGCTTAGAAT ATCAACTCTTAATTCTCTGATACATATGTTGAAGGATGACTACATTTCTCGAACAAGTAGTTGTGACTTAAGATCGAAGT AGTACACTTACACCAGAGTACCTGCATCTTGAAGGATGACAACATTTCTTGACCTGGTAGTTGAGACTCAAGATCGAAGT AGTAGCACTTACAGCACAGTACCTAAATTTGAGTATTTTAGAACACTTTGATTTTCCCCATGTGTTGTAGGACAGTGAAC CCTATTATTAAAAGAATCTTCCAACCAAACTGTTCAAAATTACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAATT CACATAGTTTAAGAAATGTAGTAAAACTAGATAAAATGCATTAAATTTGTCTTGAATCAAAATAAACTTCCAAAATTACC CTTTGTTATTCATGTTGGAAAGTGGGAAAGAGAGAGAATAATTAATGAGACACATTCTACAAGTTAGAATTAATAAGGGC ATCATTGGAAAAAAATAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTC ATGCTTATAAATAGGACCGGAGGGAGTATAATCATTGGAAATATTGAATTTCGGAAGTGCTCTGTTTATTTTTAGTGTAG TGAAAATAGCTAGAAAACTGAGAATAATCAGAAAGAGATTAATTCAAAATGCACATGACCTACATTCGTAGGTTTACCCA GTATATGTGTATTAGATATGTTGTCTAAAGATAAATTCTTTTTCTGGTTTATATGTGAGCAATTAACTTCACTTCTTCTG CAGGGGTTGTGGTCGTGTCCGGCTTCCACACTACTACTGCTGTAGTGGGAAACCAAACCACGATCATACTGGTGAGCAGA ATGGTCGAAACTGATCCACCTCTTTGTCATGGAGCACCATATGTTGGTTGATGGCAGAGCCACCGTATGTAGGTCTTGCT TATGATCATTAGTTACTTCATGGGATTAGCCATTTTCGTAGTAATGCTTTATTTCCATCTTGTATAAGCAATCCGATTGT AGGGTTGGAAGTTTTTGGCTTTAAAAGATAAATGCAATGGTGATGGGCAAAATTTATGAATTTTGAAGATGGTATTTTGC TTCCGTTGCTTTACCAATTGATCTAAAGGCTCACGTATGAATGGCATTGTTCTTTTGAAGCTGAATATATGTTGTTAGTG TTACTAATATTTGAACCAGCTAGATGTAGGAAATGAATCATATTTTCCTATGTAAACAAACAAAAATAGGAACCGCACCA TTGCAAAAG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0034200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACGAGATTCGCGATTCTCAGGGGCAATGGGAGGAACCTTTTAGGGTTCAATAGGTTGTTTCATTCCGTGCCTCA AGCTCCTCCTTTAGTTGGGAGCATTGACATTGGAGTTCCGTCATCGCAACCGGTTTTGCCTGAGTTTACTTCCCCGAGTT TCTCTTTTGGTGATTCTATGGAGCTCATGGCTGTCCCCAAAAAGAAGATTTCTAAGTCTAGAAGAGGAATTAGAAATGGA CCAAAAGCTTTGAAACCTATTCATGTGCTTGTCCTGTGCAAGGGTTGTGGTCGTGTCCGGCTTCCACACTACTACTGCTG TAGTGGGAAACCAAACCACGATCATACTGGTGAGCAGAATGGTCGAAACTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0034200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATRFAILRGNGRNLLGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFGDSMELMAVPKKKISKSRRGIRNG PKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTGEQNGRN

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21026 View details on PTHR21026 Search for proteins/transripts with this domain View external data on PTHR21026	10	121	112	4.2E-34	–
SUPERFAMILY	SSF57829 View details on SSF57829 Search for proteins/transripts with this domain View external data on SSF57829	62	108	47	4.94E-12	IPR011332 Show description in modal box View details on IPR011332 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01783 View details on PF01783 Search for proteins/transripts with this domain View external data on PF01783	64	108	45	1.9E-10	IPR002677 Show description in modal box View details on IPR002677 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01031 View details on TIGR01031 Search for proteins/transripts with this domain View external data on TIGR01031	64	107	44	4.9E-8	IPR002677 Show description in modal box View details on IPR002677 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003735 View details of GO:0003735 AmiGO InterPro QuickGO	Molecular function	Structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.	Subterm of View details of GO:0005198
GO:0006412 View details of GO:0006412 AmiGO InterPro QuickGO	Biological process	Translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.	Subterm of View details of GO:0034645 View details of GO:0043043 View details of GO:0044267 Part of View details of GO:0010467
GO:0015934 View details of GO:0015934 AmiGO InterPro QuickGO	Cellular component	Large ribosomal subunit	The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).	Subterm of View details of GO:0044391

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0034200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi4g1v0034200.1