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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0099000 |
| Transcript ID | LotjaGi5g1v0099000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi5g1v0099000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17798983..17801934) extracted from Lotus japonicus Gifu genome v1.2.
ACACAATCGGGTCAAACATTGGGTCTGAAATGAAACCCTAGAAAAGGTGATTGAATTGCAATTCACAAACCACATTCAAC GACGGTGGTGCATTTGCAGTTGATGAAGGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATCACTCTCGAGGTC GAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTAGATGATACCATTGAATTGAATCTCT CTTTCTTTGTAATTTTCAGTTTTTGTGTTTTTATCTGAATTCTGTTGAATTGAATTGAATGAATTGAATAGGCATTCCAC CGGATCAGCAGCGTCTCATTTTCGCTGGGAAGCAGCTTGAAGATGGAAGAACCTTGGCTGATTACAACATTCAAAAGGGT GTGTAATCTGATTTCCTCTCTGTTCTATTTCTTTACAACTAAATTGTCAGTGAAATGGTTGATTTTTCTCCATGAAAGAT AATAGAGGATGATTTGTTATGTATTTGAGATTGATATGAACTGGGAATAGCTTAATTGAACTTGAAAATGACAGTCATTG AAGTGACTGAATTCATCATTTTTCGGGTATTATTTACTCCGTCGAATGATTTGGTGAATCTGTTTACTCATGTATGTAAT AATGATGATGATAATGATATGAATTGTGGTTACTTCAGAATCGATGCCTCATCTTGTGCTTAGACTTTGTTTCCTGAGAA ATAAGAGAGTGTAAATTTGGTATTTATTTGGGATGTGAACTTGTAATGACTTAATTGAACATGAAAATGACAATCATTGA AGTGAATGAGTTCATATTTTTTTCAGGGACTACTTGCTCCTTCTAAAAATTTGGTGAATCTGTTGACTAATGTTTATTTT TATAATATGATATGAATTGTTGTTATTTCAGAATCCACGCTTCATCTTGTGCTGAGACTTCGTGGGGGTATCATTGAGCC TTCATTGATGGCTTTGGCTCGCAAATACAATCAGGACAAGATGATCTGCCGCAAGTATGCTTCTCTCATATCTTTAATTT TTATGCTTCTTCATGACTGGCACTTTTTATTTTTGTATTTTGACCTTTTTATTAAATGCATTTCTGGGAAAGAAATTCAT CTTTTGGGAATGGTTCTTTTTGGTTATTTTGAAAAGTTAGAGACATAATAAAATGATTTTTAATCCCGGAACAATCTCGT CCAAACAGATGCTTATTCATGATAGTTTCATGGTATTGGACCTTGGGGGGTTGGATAGAGTTCTGAAGCCTCATCTTTGA TTCTTCTCATACTTGCATTTCATGGGTTTTATTTATGATTGATCTTTGGTTCTTATACTTGCATTTCATGCGTTTTGTTT GTGTTTGGTTTTGTTGCAAGTTGGGATAGTTACATATCCTATTTTGCTGTGGAAGTGCTAAAGAGTTAATGTCTCATCAT GTTCCCTAACTGGCTTTCCTTACTGTCAGTTGAGTTTCATGGGTGGTGTATTATATTTTAATGTTTTTTTGGCTGATAAA GAAGCAAAGTTTGTTGAAAGTTTAGGTGGGGTGAAATTATCTGAGGTTGTGAATTGTGTCAAATGATTCTGCTGTCATTA GCTCCATGCCCTGCCTTTATTTGCTTGAGCTCTTTATTTATGTGATGCGCAGCTATTTGTGCTTGAACTTGCACCATAAT CGAATTATGATGTTCATGTTTTATTGGTTACATTGTGTTTTTGCAAAAAAGTTGACAGCTTAAGCATGATTTATTTTCCT GTTACTGCTAGTGGTGGCTTGAAAATTTTAGGTTGACACATTCCATCATGATTGTATGCACTAATTTTCATATTTTTTCT GTATTAGATGCTATGCTCGTCTGCATCCAAGGGCTGTAAACTGCCGCAAAAAGAAGTGTGGTCACAGTAATCAGGTTAGT GTGATTCCCATTATAATCCTTTCGTTACATCTTATACTTTATGAGTTTATTCCTGCTGTGCTTAGTGGTGACAAACTATG TGGCACTGAAATGTTGTTTATGTCTTGCAGTTGAGGCCAAAGAAGAAGATCAAGTAAACTAAGGCTGATTTTGTTCGTCT CTTGGGGCGACTCAGGAGTAGTAGTTGATTTCTCTTGTTACAGTTGGTTATATTCATACATTGGTGTTAACCGGGTTTCA AATGGTTTTGGATTTATTTGTCTAGCATTTGACTATGTATGCTATGATCTGTTTAAACTTTAAATACTTCCATGACATGA TCTGTTTCACTTTTCAGTCTTTGTTTTTTCTCATCTCTTATTCTGTCCTAGCCACAAGTATTGGTAAAAGATCGCATATG CTGAGTAGTGTGGCCATCCAAATAGAACAGTAAAAAGTTGAACGTTTTCTTAGTGTAATAACTACAATTTATCTGCATTG CGAATATAGAAGATATTAAAATTATTTCTACATTAAAACATAATATAGTATTGAAGCTTAAGTGTACTTGACAACACCAT GGGTATGTTCTTCGGCTAAATAGAACACATTTTTAAAGGAGAAATGCTTTTTCTACTTTATGCTCTCTCTCTCTATCACA CATTTATATCTTGCTGGTTAGTTTCGGAGTGCAGATTTCATGCTCCAAGCTTTGAGCTTCTCAATTGTGACCTTCTCAGT ACCGTTGTTGAAAACAAACAAATGAGCATTTTCCTTCACTGCTAGCGTTGGATATACCCTAGACAAGATGTTAGTTCTCC CTCCTGCTCCAAAACTCTCCACTACGGAGTGATCAACCTGCCATTAAAATCCCAACATTAAGAAATTATTTACCATTGGC TTCGCATAGAGTTCATGAATGTGAATGTAAGACAAAAATGAGAGAAGGTTTGCACACACCAAACTCCTAAGTGAAAGTTT CTTATGGGCCAAATCCACATCTAGGAAGCCTCCAAATGATGGCTTGTACAATTCACTCTTCAAAGAGGATCT
CDS sequence (LotjaGi5g1v0099000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATCACTCTCGAGGTCGAGAGCAGTGACACCATCGACAATGTCAA GGCCAAGATTCAAGACAAGGAAGGCATTCCACCGGATCAGCAGCGTCTCATTTTCGCTGGGAAGCAGCTTGAAGATGGAA GAACCTTGGCTGATTACAACATTCAAAAGGAATCCACGCTTCATCTTGTGCTGAGACTTCGTGGGGGTATCATTGAGCCT TCATTGATGGCTTTGGCTCGCAAATACAATCAGGACAAGATGATCTGCCGCAAATGCTATGCTCGTCTGCATCCAAGGGC TGTAAACTGCCGCAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA
Protein sequence (LotjaGi5g1v0099000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 77 | 77 | 3.5E-44 | – | |
| SUPERFAMILY | 1 | 76 | 76 | 2.12E-34 | ||
| ProSiteProfiles | 1 | 76 | 76 | 30.452 | ||
| SMART | 1 | 72 | 72 | 3.0E-35 | ||
| CDD | 1 | 76 | 76 | 3.84251E-55 | – | |
| PANTHER | 1 | 128 | 128 | 2.4E-81 | – | |
| PANTHER | 1 | 128 | 128 | 2.4E-81 | – | |
| Pfam | 3 | 74 | 72 | 1.8E-34 | ||
| PRINTS | 11 | 31 | 21 | 4.6E-39 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| PRINTS | 32 | 52 | 21 | 4.6E-39 | ||
| PRINTS | 53 | 74 | 22 | 4.6E-39 | ||
| SUPERFAMILY | 76 | 127 | 52 | 2.93E-18 | ||
| SMART | 77 | 128 | 52 | 3.6E-33 | ||
| Pfam | 78 | 127 | 50 | 1.2E-31 | ||
| Gene3D | 78 | 128 | 51 | 2.1E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0099000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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