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IPR011332 is a Zinc-binding ribosomal protein.
<p>This superfamily represents a rubredoxin-like metal-binding fold found in bL32, bL33, eL37, eL43, eL40, eL42 and other ribosomal proteins. This domain contains two CX(n)C motifs (where n is usually two) [[cite:PUB00030943], [cite:PUB00030432]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] gi|449483218|ref|XP_004156525.1| | 6 | ||
| – | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| | 18 | ||
| – | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| | 18 | ||
| – | PREDICTED: 50S ribosomal protein L33-like [Glycine max] gi|356552533|ref|XP_003544621.1| | 7 | ||
| – | Ubiquitin [Medicago truncatula] gi|357519213|ref|XP_003629895.1| | 18 | ||
| – | RecName: Full=60S ribosomal protein L37agi|4090257|emb|CAA10493.1| ribosomal protein L37A [Pseudotsuga menziesii] gi|6831607|sp|Q9ZRS8.1|RL37A_PSEMZ | 8 | ||
| – | PREDICTED: 60S ribosomal protein L37-2-like isoform 1 [Cucumis sativus] gi|449448036|ref|XP_004141772.1| | 8 | ||
| – | PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera] gi|225427377|ref|XP_002282974.1| | 8 | ||
| – | PREDICTED: 40S ribosomal protein S27-2-like [Glycine max] gi|356498613|ref|XP_003518144.1| | 10 | ||
| – | 60S ribosomal protein L44 [Medicago truncatula] gi|357445721|ref|XP_003593138.1| | 10 | ||
| – | Ribosomal protein L32 [Populus alba] gi|209976916|dbj|BAG80685.1| | 8 | ||
| – | Ribosomal protein L32 [Populus alba] gi|209976916|dbj|BAG80685.1| | 7 | ||
| – | PREDICTED: 50S ribosomal protein L33-like [Glycine max] gi|356552533|ref|XP_003544621.1| | 7 | ||
| – | 60S ribosomal protein L37aA [Hevea brasiliensis] gi|313586497|gb|ADR71259.1| | 6 | ||
| – | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| | 15 | ||
| – | 60S ribosomal protein L44 [Medicago truncatula] gi|357445721|ref|XP_003593138.1| | 10 | ||
| – | Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0293700 | 21 | ||
| – | 40S ribosomal protein S27; TAIR: AT3G61110.1 ribosomal protein S27; Swiss-Prot: sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2; TrEMBL-Plants: tr|W9R670|W9R670_9ROSA 40S ribosomal protein S27; Found in the gene: LotjaGi1g1v0635900 | 9 | ||
| – | Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0674100 | 21 | ||
| – | Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 | 21 | ||
| – | Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 | 21 | ||
| – | 60S ribosomal protein L37a; TAIR: AT3G10950.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a; TrEMBL-Plants: tr|A0A1J7GYJ7|A0A1J7GYJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0418300 | 6 | ||
| – | Ribosomal protein L37; TAIR: AT1G52300.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2; TrEMBL-Plants: tr|I3T5Z7|I3T5Z7_LOTJA Ribosomal protein L37; Found in the gene: LotjaGi3g1v0017600 | 11 | ||
| – | 60S ribosomal protein L37a; TAIR: AT3G10950.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a; TrEMBL-Plants: tr|A0A072TFU7|A0A072TFU7_MEDTR 60S ribosomal protein L37a-2; Found in the gene: LotjaGi3g1v0069900_LC | 8 | ||
| – | Ribosomal protein L37; TAIR: AT1G52300.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2; TrEMBL-Plants: tr|I3T6T0|I3T6T0_LOTJA Ribosomal protein L37; Found in the gene: LotjaGi3g1v0366100 | 11 | ||
| – | 60S ribosomal protein L44; TAIR: AT3G23390.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q96499|RL44_GOSHI 60S ribosomal protein L44; TrEMBL-Plants: tr|K7M9P7|K7M9P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0032400 | 9 | ||
| – | 60S ribosomal protein L44; TAIR: AT3G23390.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q96499|RL44_GOSHI 60S ribosomal protein L44; TrEMBL-Plants: tr|A0A068V1D2|A0A068V1D2_COFCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0032400 | 9 | ||
| – | 50S ribosomal L32; TAIR: AT1G26740.1 Ribosomal L32p protein family; Swiss-Prot: sp|Q2RTT0|RL32_RHORT 50S ribosomal protein L32; TrEMBL-Plants: tr|I3S1A7|I3S1A7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0034200 | 6 | ||
| – | 60S ribosomal protein L37a; TAIR: AT3G10950.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q9ZRS8|RL37A_PSEMZ 60S ribosomal protein L37a; TrEMBL-Plants: tr|A0A1J7GYJ7|A0A1J7GYJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0193700 | 15 | ||
| – | Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|I3TAN7|I3TAN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0383400 | 21 | ||
| – | 40S ribosomal protein S27; TAIR: AT3G61110.1 ribosomal protein S27; Swiss-Prot: sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2; TrEMBL-Plants: tr|W9R670|W9R670_9ROSA 40S ribosomal protein S27; Found in the gene: LotjaGi5g1v0045800 | 9 | ||
| – | Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi5g1v0099000 | 21 | ||
| – | 60S ribosomal protein L44; TAIR: AT3G23390.1 Zinc-binding ribosomal protein family protein; Swiss-Prot: sp|Q96499|RL44_GOSHI 60S ribosomal protein L44; TrEMBL-Plants: tr|K7M9P7|K7M9P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355300 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 3.03 |