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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012462
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.015s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0295850.1
n.a. PREDICTED: probable Ufm1-specific protease-like [Cicer arietinum] gi|502133631|ref|XP_004501836.1| chr1 3465942 3471903 -
2 domain predictions
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Lj1g3v0295850.2
n.a. PREDICTED: probable Ufm1-specific protease-like [Cicer arietinum] gi|502133631|ref|XP_004501836.1| chr1 3465942 3471903 -
2 domain predictions
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Lj2g3v2183230.1
n.a. PREDICTED: zinc finger with UFM1-specific peptidase domain protein-like [Cicer arietinum] gi|502095740|ref|XP_004490526.1| chr2 32739796 32742983 -
2 domain predictions
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LotjaGi1g1v0128500.1
n.a. Zinc finger with UFM1-specific peptidase domain protein; TAIR: AT5G24680.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; Swiss-Prot: sp|Q3SWY8|ZUFSP_BOVIN Zinc finger with UFM1-specific peptidase domain protein; TrEMBL-Plants: tr|K7KA31|K7KA31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0128500 LjG1.1_chr1 20509729 20515005 +
2 domain predictions
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LotjaGi1g1v0230900.1
n.a. Ufm1-specific protease 2; TAIR: AT3G48380.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; Swiss-Prot: sp|Q9STL8|UFSP_ARATH Probable Ufm1-specific protease; TrEMBL-Plants: tr|V7B0G2|V7B0G2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0230900 LjG1.1_chr1 54127101 54133459 +
2 domain predictions
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LotjaGi1g1v0302900.1
n.a. Zinc finger with UFM1-specific peptidase domain protein; TAIR: AT5G24680.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; Swiss-Prot: sp|Q96AP4|ZUFSP_HUMAN Zinc finger with UFM1-specific peptidase domain protein; TrEMBL-Plants: tr|G7J9Q3|G7J9Q3_MEDTR Zinc finger with UFM1-specific peptidase domain protein; Found in the gene: LotjaGi1g1v0302900 LjG1.1_chr1 73854776 73863373 +
2 domain predictions
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LotjaGi1g1v0302900.2
n.a. Zinc finger with UFM1-specific peptidase domain protein; TAIR: AT5G24680.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; Swiss-Prot: sp|Q96AP4|ZUFSP_HUMAN Zinc finger with UFM1-specific peptidase domain protein; TrEMBL-Plants: tr|G7J9Q3|G7J9Q3_MEDTR Zinc finger with UFM1-specific peptidase domain protein; Found in the gene: LotjaGi1g1v0302900 LjG1.1_chr1 73854912 73860664 +
2 domain predictions
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LotjaGi1g1v0302900.3
n.a. Zinc finger with UFM1-specific peptidase domain protein; TAIR: AT5G24680.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; Swiss-Prot: sp|Q96AP4|ZUFSP_HUMAN Zinc finger with UFM1-specific peptidase domain protein; TrEMBL-Plants: tr|G7J9Q3|G7J9Q3_MEDTR Zinc finger with UFM1-specific peptidase domain protein; Found in the gene: LotjaGi1g1v0302900 LjG1.1_chr1 73854936 73861109 +
2 domain predictions
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