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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012466
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.122s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0014309.1
n.a. Non-intrinsic ABC protein 4 [Theobroma cacao] gi|508702515|gb|EOX94411.1| chr0 5487427 5490282 -
3 domain predictions
2 GO terms
Lj3g3v2848950.1
n.a. PREDICTED: adaptin ear-binding coat-associated protein 2-like [Glycine max] gi|356543898|ref|XP_003540395.1| chr3 35124262 35127740 -
3 domain predictions
2 GO terms
Lj5g3v1097070.1
n.a. Non-intrinsic ABC protein 4 [Theobroma cacao] gi|508702515|gb|EOX94411.1| chr5 17638761 17640922 +
3 domain predictions
2 GO terms
Lj5g3v1117130.1
n.a. Non-intrinsic ABC protein 4 [Theobroma cacao] gi|508702515|gb|EOX94411.1| chr5 17676327 17679182 +
3 domain predictions
2 GO terms
LotjaGi3g1v0450100.1
n.a. Adaptin ear-binding coat-associated protein 1; TAIR: AT3G58600.1 Adaptin ear-binding coat-associated protein 1 NECAP-1; Swiss-Prot: sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2; TrEMBL-Plants: tr|I1LUL7|I1LUL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0450100 LjG1.1_chr3 86369824 86373797 -
3 domain predictions
2 GO terms
LotjaGi5g1v0157300.1
n.a. Adaptin ear-binding coat-associated protein 1; TAIR: AT1G03900.1 non-intrinsic ABC protein 4; Swiss-Prot: sp|Q681Q7|Y1390_ARATH Uncharacterized protein At1g03900; TrEMBL-Plants: tr|A0A072VLL1|A0A072VLL1_MEDTR Adaptin ear-binding coat-associated protein 1; Found in the gene: LotjaGi5g1v0157300 LjG1.1_chr5 40598284 40609579 -
3 domain predictions
2 GO terms