Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1117130.1

Overview

Field Value
Gene ID Lj5g3v1117130
Transcript ID Lj5g3v1117130.1
Lotus japonicus genome version MG20 v3.0
Description Non-intrinsic ABC protein 4 [Theobroma cacao] gi|508702515|gb|EOX94411.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12847
3 280 278 4.10E-126 –
PANTHER
PTHR12847:SF3
3 280 278 4.10E-126 –
SUPERFAMILY
SSF50729
6 136 131 9.22E-49
IPR011993
Pfam
PF07933
11 174 164 8.00E-55
IPR012466
CDD
cd13228
12 132 121 2.53E-73
IPR012466
Gene3D
G3DSA:2.30.29.30
14 136 123 2.40E-50
IPR011993
MobiDBLite
mobidb-lite
174 248 75 – –
MobiDBLite
mobidb-lite
261 280 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006897
Biological process Endocytosis A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v1117130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1117130.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.