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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0450100 |
| Transcript ID | LotjaGi3g1v0450100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Adaptin ear-binding coat-associated protein 1; TAIR: AT3G58600.1 Adaptin ear-binding coat-associated protein 1 NECAP-1; Swiss-Prot: sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2; TrEMBL-Plants: tr|I1LUL7|I1LUL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0450100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86369824..86373797) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAAAAACATTTCTACAGTATATTCCATTAACTCTAAGCATATGTTGTATTGACTAATATATTTTTGGCTTATATTTT TCTCTGTATTTTTTTGGTTGACTTGAAATTGAAGCAACCATTGTCCCACCCAATCCATGTACCAAACCCTCCATTTCAGA CCGTCTGATACCTAACGTGTCCCAATCGTACGGTGCTCATTGCTCCAATGCACAACCGTTTCGATGCGGCGTCGTCTCCG TCCTCTTCAACCAGAAATTACCAAACCCTAATTCTCTGAAATTCGATTCCCCATTTCTTCCCCCAAATCCTCACTCTCTG CTGACCCAGATCGATTCCCCATTTCCATAATCAAATTCGCCTCCCAATCATGGAGAAGGAGGAGAACAAACCCGACATTG AGAATAATGGCGGCGAAACCGATGACACTGAACCCATTGAGCTCGTTCTCTTTCAAGTGCCTGAGTGTTACGTCTACATA GTAAGTCTTGCCAATACTTTTGATGGGTTTGTTTCAAAATTTGATTTTGATGAATATTTTGCAATTTGCAATTGAATGGG GTATAGAGGATCGAGTTTGATATTAGGGTTTGGAATTGCAATTTAAGCTTGTCAAGAGATTATGGTGGCATTGAATATTA CTTCATTTTTTTTCTTTTCAATATTGACTGTCACTCTTTCGGTGATGAGATGGGGCTTGGAATTTGAACACTTTTCTGCT TTCAAGCTAATGTATTCTACTATTTGTGCAGATACCTCCAAGAAAGAGTGCAGCTTCTTACAGGTTTGTGATCAATTTAA AACTAGCTTCTGATCTTTGTACTTGTGATCTGTTGTGTTCCTGCACAGCATATTGTTAAAGTTAATAATGCACTCTGCTC TTGATAAAGAAACTGCTGTTTTCAGAGTCCATGGAAGTGTGTAGGAATAGGTCAATAGGATCTATTTGAGTATATTTGCT ATTCTTTTAATTATTTTGTGTCTCATTACCCTCATGGATGATGGAACAGTGATCTTTATGAAGGAATTGATTTTCAACTT TTGACTGTTTAGTCACTAACTATTGGTGTTTTTGTTGTTATTATTATTGGCTGCTGTTAAGCGTGTGATTGTCCAATATT TATGTTTTTGAAGTACATTTCAGGGCTGATGAATGGGATGTCAATAAATGGGCATGGGAAGGGATATTGAAAGTAGTTAG CAAGGGAGAAGAATGCATCATAAAACTTGAAGATAAGAACACAGGTAATGTTTAAAATAAGCTTTAATTAGATTATACAG TTAATTGTTTTTCTTCTATTAAATTGTTCATTACTACAATGAAATGCATTTAACTAGGTGAGTTATATGCTCGGGCATTT TTAAGGAATGGAGAGCCGCATCCTGTGGAAGCTGTTATTGATAGCAGCAGGTGGTTTTTCATTACTGTTGGTAGATTTTA GTTGTTATCATACCTTTTTTTGTACTTTAGGATGATTAAATAATTATATTTACGTTCTGCAGATATTTTGTTCTTCGCAT AGAAGAGAACATAGGTAAGCCATTTCATCTACATTTTTCTTTACTTCTTTTGTTCCCTTAATCATCTTACTTCCCATGTG CGGGCTAAAGGTAGGATTTGTAAACGAATGAAATTGGATAAAATGAAATGATAACCTATTTGGTTGGTTTATATTCCTCT CAAAACAAACTATAATGAACAATTAGCTTGGTTTCAACTATCAAGTACATAGAAAAAGTTCTTAGTTGTGGACAATTTAT TTGTTTTTATTAAGAATTTAGCTTGTTTGTGAAAGCTTCTGAAAACCGACTTGCAATCATTGAATTCTTGAGTTTACGAC AATTTATTTGTTTTTATCTTCCGCCCTAGTACAGGTGAACAACCGTAGTGTTTAGACCTTCTGAATAGGTGAACAACCGT AGTGTTTCATGACCATAAATATTCCTAACTCCAGAATCTTTACATTCTTGCACAAATTGTCTCAAAATAAAATTTTATTG CACAACTGTCTTAAAATTCTAGTTAGTTACCATTATAACCAAGAGGTCTCAAGATCGGCTCATTGCACCACTTGTCTTTA AATAAAGAATTCTTAGAATATGATTGTGCCCAGATCATATTCTCGGTACTCTACTACTAGTATAATATAGGACAATCTTT TGTGATGCAGTACAAGGGAAATACATCCTCTGATCCTTTAATGACAAGTGACTTTTACCATCTTCCCCAGTTCCACTTTC TTCTTGTAACAACCATAATTTATAATTTTCTATCCATGTTATCACATTACTTCTTTTGAACATGAGGAAATTTATGTTTT AGTGCTTTTTACCTGTTTCCTGTTTCGACATTTCAAAATGGAAAGGCTGTTTAGTTTTGCTCCCTCGTTATCAAAGAGTA TTTTTCATTTTGCTGCAATCTACTTCTTATTACTTACAAAGTTTGGTCTTGATTACTTGTAAATCATGCAGGTGGTCGTC TTCGACACGCATTTATTGGCGTAGGATTCCGAGAAAGAACAGAGGCTTATGACTTCCAAGCTGCCTTGCATGATCATATG AAGTATCCTCCATCCAGTATAATTAGATTCACCATTTTTATTGGATTTGTCGATCTCACTATCTGCAAAACTTAGTATTC TTTACACTTTGCATACATTCTTGTTGGCATAGAGGATAAAAGTCTTCATGCTGTTTTTTTACAAATGGAAAGTTTGTCTT TTCCTAAACTGTTTTTAAGATACCTGAACAAAAAGAAGACTGCAGAAGAGATGGAACAGCATTACCAGCAATCTTCGTCA GTTGATTACAGTTTGAAAGAAGGAGAGACTCTTGTGCTGCAACTTAAGAACAATGTATGGAAATCTGCACTTTCCTGTTA TGCATGAGGTTCATTTATTTTTCCATTATTATGATCTCTATATATCCTATCTGTGGTGTGCAGAGAAGTGGCCCCAATGT GAAGTCCAAGTTTTTTGAGCAGGGTCTGAACAACTCCTCAGAAGAAAAGAGTGGAAAAGAATCTGTACCCGCAATTAAGT TACCCCCACCTCCTCCTGCATCAGTTTTAACTGTTGCTGCCGTACAGAATTCTCCAACAAACTCACCTACAGAATTTAGC CCTGAGAAAACTTCAAAACTTGAGACCTCTAAAACGATTCAAGAAGATGCAGAAGGTGAAAAACCTCCTGAAAACCAAAG CACACAGGATGTAGTAGATGATGATTTTGGCGATTTCCAAGCAGCTGGTTAGCCTATCCATTGGGCAGTTTGAATTTGAA ATGATTAGGAAACATGCTCAATTGTGGACTCCTTGTTCAGACTGCTGATTCAGCTTGGAGATTCAATTATGTCCTTCCAA AATAGCCAACAAAATATCATTAAGATTTAAGAATCTACCTCTTCTGCTTGTCAATAGGTTGTTGTCTTAGTTGCACTGTG GGTAACTACTATTGAGAGTTTTTCCTCCCTCCTTGAGTCTCTTTCTTTCAGTATTATGCTTTGTTTATACTTCTCAGTGT TGGCATACCTCAATAGTCAATAGTCATTTGGTACATTCTAAACATGGGTTCATAGCTTTGTTGATAATATAAATGTTGCT ATTATCAAAGAACCAAATTTAGCTTTTATGGCCTTGTGTATCCGTTCCCTTGCGTGGTTGAGGACCATGAGTAGCAACAA GCAAGGACAAAGAAAAATGAAAGACGTGTTTGACTTAGGTTGGTTTCCGTTGAACGCCAATTATGTTTTACCTTTTCCCC ATGTTTTTGTGTGTTTGGATACCATTTGAGTGTAATGCGAACAAACTTTTATCTTAGTTTATCAAAAGTTTTATTCACTT TTTGCATTGACATGTCTTCATCCTTGGGAAGTTGCTTCATGCATTGCTAGGTTGTTAAATGTCCATTGAACTCAAGCTAC TGACCAAACCCTCAACATATATAAGCTGGGGGGTAAATGGACAACAAATATGGG
CDS sequence (LotjaGi3g1v0450100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGGAGGAGAACAAACCCGACATTGAGAATAATGGCGGCGAAACCGATGACACTGAACCCATTGAGCTCGTTCT CTTTCAAGTGCCTGAGTGTTACGTCTACATAATACCTCCAAGAAAGAGTGCAGCTTCTTACAGGGCTGATGAATGGGATG TCAATAAATGGGCATGGGAAGGGATATTGAAAGTAGTTAGCAAGGGAGAAGAATGCATCATAAAACTTGAAGATAAGAAC ACAGGTGAGTTATATGCTCGGGCATTTTTAAGGAATGGAGAGCCGCATCCTGTGGAAGCTGTTATTGATAGCAGCAGATA TTTTGTTCTTCGCATAGAAGAGAACATAGGTGGTCGTCTTCGACACGCATTTATTGGCGTAGGATTCCGAGAAAGAACAG AGGCTTATGACTTCCAAGCTGCCTTGCATGATCATATGAAATACCTGAACAAAAAGAAGACTGCAGAAGAGATGGAACAG CATTACCAGCAATCTTCGTCAGTTGATTACAGTTTGAAAGAAGGAGAGACTCTTGTGCTGCAACTTAAGAACAATAGAAG TGGCCCCAATGTGAAGTCCAAGTTTTTTGAGCAGGGTCTGAACAACTCCTCAGAAGAAAAGAGTGGAAAAGAATCTGTAC CCGCAATTAAGTTACCCCCACCTCCTCCTGCATCAGTTTTAACTGTTGCTGCCGTACAGAATTCTCCAACAAACTCACCT ACAGAATTTAGCCCTGAGAAAACTTCAAAACTTGAGACCTCTAAAACGATTCAAGAAGATGCAGAAGGTGAAAAACCTCC TGAAAACCAAAGCACACAGGATGTAGTAGATGATGATTTTGGCGATTTCCAAGCAGCTGGTTAG
Protein sequence (LotjaGi3g1v0450100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKEENKPDIENNGGETDDTEPIELVLFQVPECYVYIIPPRKSAASYRADEWDVNKWAWEGILKVVSKGEECIIKLEDKN TGELYARAFLRNGEPHPVEAVIDSSRYFVLRIEENIGGRLRHAFIGVGFRERTEAYDFQAALHDHMKYLNKKKTAEEMEQ HYQQSSSVDYSLKEGETLVLQLKNNRSGPNVKSKFFEQGLNNSSEEKSGKESVPAIKLPPPPPASVLTVAAVQNSPTNSP TEFSPEKTSKLETSKTIQEDAEGEKPPENQSTQDVVDDDFGDFQAAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 15 | 287 | 273 | 2.4E-129 | – | |
| PANTHER | 15 | 287 | 273 | 2.4E-129 | – | |
| SUPERFAMILY | 21 | 151 | 131 | 6.52E-46 | – | |
| Pfam | 23 | 182 | 160 | 5.4E-50 | ||
| CDD | 26 | 147 | 122 | 2.32274E-70 | ||
| Gene3D | 27 | 152 | 126 | 1.2E-44 | ||
| MobiDBLite | 200 | 287 | 88 | - | – | |
| MobiDBLite | 228 | 247 | 20 | - | – | |
| MobiDBLite | 248 | 267 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Endocytosis | A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0450100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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