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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0461500 |
| Transcript ID | Lj2g3v0461500.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|357500885|ref|XP_003620731.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 459 | 459 | 0 | – | |
| PANTHER | 1 | 459 | 459 | 0 | – | |
| TIGRFAM | 7 | 454 | 448 | 5.40E-216 | ||
| Pfam | 7 | 179 | 173 | 2.40E-85 | ||
| CDD | 9 | 373 | 365 | 2.05E-84 | – | |
| Gene3D | 9 | 272 | 264 | 1.00E-104 | ||
| SUPERFAMILY | 9 | 177 | 169 | 4.53E-33 | ||
| ProSitePatterns | 110 | 125 | 16 | – | ||
| SUPERFAMILY | 180 | 267 | 88 | 9.70E-67 | ||
| Pfam | 180 | 454 | 275 | 1.00E-108 | ||
| SUPERFAMILY | 305 | 452 | 148 | 9.70E-67 | ||
| Gene3D | 327 | 374 | 48 | 9.70E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Hydroxymethylglutaryl-CoA synthase activity | Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+). | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of Lj2g3v0461500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0461500.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.