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Lj1g3v1466220.1

Overview

Field Value
Gene ID Lj1g3v1466220
Transcript ID Lj1g3v1466220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24067:SF29
2 177 176 8.90E-78 –
PANTHER
PTHR24067
2 177 176 8.90E-78 –
ProSiteProfiles
PS50127
5 140 136 37.93
IPR000608
SMART
SM00212
5 151 147 1.10E-58 –
SUPERFAMILY
SSF54495
6 151 146 4.57E-49
IPR016135
Gene3D
G3DSA:3.10.110.10
6 155 150 2.60E-56
IPR016135
CDD
cd00195
6 146 141 1.37E-57 –
Pfam
PF00179
6 145 140 9.30E-42
IPR000608
ProSitePatterns
PS00183
77 93 17 –
IPR023313
SUPERFAMILY
SSF46934
129 193 65 7.34E-09
IPR009060
ProSiteProfiles
PS50030
156 193 38 12.185
IPR015940
Gene3D
G3DSA:1.10.8.10
156 192 37 2.10E-06 –
Pfam
PF00627
158 192 35 5.10E-07
IPR015940
CDD
cd14312
158 193 36 2.37E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj1g3v1466220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1466220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.