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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018997
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.457s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001969.1
n.a. Ubiquitin and WLM domain-containing protein [Medicago truncatula] gi|357469919|ref|XP_003605244.1| chr0 601758 603997 -
4 domain predictions
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Lj0g3v0089719.1
n.a. Ubiquitin and WLM domain-containing protein [Medicago truncatula] gi|357469919|ref|XP_003605244.1| chr0 36871111 36876330 +
2 domain predictions
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Lj0g3v0089719.2
n.a. Ubiquitin and WLM domain-containing protein [Medicago truncatula] gi|357469919|ref|XP_003605244.1| chr0 36874494 36876330 +
2 domain predictions
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Lj2g3v1589600.1
n.a. PREDICTED: serine/threonine-protein kinase ppk4-like [Cicer arietinum] gi|502161785|ref|XP_004512283.1| chr2 25261569 25268955 +
2 domain predictions
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Lj2g3v1599840.1
n.a. PREDICTED: serine/threonine-protein kinase ppk4-like [Cicer arietinum] gi|502153776|ref|XP_004509458.1| chr2 25320564 25329377 -
2 domain predictions
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Lj2g3v3034090.1
n.a. PREDICTED: UBX domain-containing protein 6-like [Glycine max] gi|356524212|ref|XP_003530725.1| chr2 39213969 39217154 -
4 domain predictions
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Lj3g3v0730420.1
n.a. PREDICTED: UBX domain-containing protein 1-like [Cicer arietinum] gi|502155980|ref|XP_004510266.1| chr3 8313323 8319716 -
4 domain predictions
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Lj4g3v2603780.1
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920145 34925485 +
4 domain predictions
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Lj4g3v2603780.2
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920738 34925485 +
4 domain predictions
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Lj4g3v3112910.1
n.a. PREDICTED: UBX domain-containing protein 6-like [Glycine max] gi|356524212|ref|XP_003530725.1| chr4 41448697 41451929 -
4 domain predictions
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LotjaGi2g1v0353800.1
n.a. Kinase, putative; TAIR: AT2G17520.1 Endoribonuclease/protein kinase IRE1-like protein; Swiss-Prot: sp|Q9C5S2|IRE1A_ARATH Serine/threonine-protein kinase/endoribonuclease IRE1a; TrEMBL-Plants: tr|G7K1A9|G7K1A9_MEDTR Endoribonuclease/kinase IRE1-like protein; Found in the gene: LotjaGi2g1v0353800 LjG1.1_chr2 83023576 83040354 +
2 domain predictions
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LotjaGi3g1v0084400.1
n.a. UBX domain-containing protein 1; TAIR: AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1; TrEMBL-Plants: tr|A0A072TXC9|A0A072TXC9_MEDTR Ubiquitin-associated (UBA)/TS-N domain protein; Found in the gene: LotjaGi3g1v0084400 LjG1.1_chr3 9494719 9501109 +
3 domain predictions
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LotjaGi4g1v0134700.1
n.a. Kinase, putative; TAIR: AT2G17520.1 Endoribonuclease/protein kinase IRE1-like protein; Swiss-Prot: sp|Q9C5S2|IRE1A_ARATH Serine/threonine-protein kinase/endoribonuclease IRE1a; TrEMBL-Plants: tr|K7LEW9|K7LEW9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0134700 LjG1.1_chr4 19648720 19658107 +
2 domain predictions
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LotjaGi4g1v0373500_LC.1
n.a. UBX domain-containing protein; TAIR: AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|Q9BZV1|UBXN6_HUMAN UBX domain-containing protein 6; TrEMBL-Plants: tr|I3S6P1|I3S6P1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0373500_LC LjG1.1_chr4 75317769 75323127 +
3 domain predictions
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LotjaGi4g1v0373500_LC.4
n.a. UBX domain-containing protein; TAIR: AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|Q9BZV1|UBXN6_HUMAN UBX domain-containing protein 6; TrEMBL-Plants: tr|I3S6P1|I3S6P1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0373500_LC LjG1.1_chr4 75317926 75322756 +
3 domain predictions
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LotjaGi4g1v0455600.1
n.a. UBX domain-containing protein; TAIR: AT2G01650.1 plant UBX domain-containing protein 2; Swiss-Prot: sp|Q9ZU93|PUX2_ARATH Plant UBX domain-containing protein 2; TrEMBL-Plants: tr|I1KQ73|I1KQ73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455600 LjG1.1_chr4 82716182 82719816 -
3 domain predictions
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LotjaGi6g1v0023600.1
n.a. Ubiquitin and WLM domain-containing protein; TAIR: AT5G35690.1 zinc metalloproteinase-like protein; Swiss-Prot: sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c; TrEMBL-Plants: tr|G7J8W3|G7J8W3_MEDTR Zinc metalloproteinase-like protein, putative; Found in the gene: LotjaGi6g1v0023600 LjG1.1_chr6 4363860 4370193 -
3 domain predictions
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