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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455600 |
| Transcript ID | LotjaGi4g1v0455600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UBX domain-containing protein; TAIR: AT2G01650.1 plant UBX domain-containing protein 2; Swiss-Prot: sp|Q9ZU93|PUX2_ARATH Plant UBX domain-containing protein 2; TrEMBL-Plants: tr|I1KQ73|I1KQ73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82716182..82719816) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATTACATATATTTTTACAGAAATACCGTGCTTTGCAAGGGAGTATTGTCATTGTTAATTTCTCTTGTTCTGGATTT TCTCCTCTTCTCTTCAATCCTAGATTCTCTTCTCCGATCTTGAGTTTTCAGAATCAATGGGTGACATGAAAGACAAAGTC AAGGGGTTCATGAAGAAAGTCAACAACCCCTTCACCTCTTCATCATCTGGCAAATTCAAGGGTCAAGGTAGGGTTTTGGG ATCTTCATCATCATCTTCTTCTTCTTCTGCACCCATCAATCCCAATCGCAATCCCACTCCTCGCCTCACTCCCACCCAGA ACCCTAATCCCAATTCCAAACCCCGTCCAGCTTCAACTACCAATCACGAACCCTCGCCGCAGAAAACCAATCGCAATCCG GGTGACGGGTTTGACCCGTTTGATTCCCTCGTCACTTCATCCAACAGATCGCAAAATGGGTACTCGCTGAACGTGTATGA ATGCCCCATTTGTAAACAACCGTTCCGATCCGAAGAGGAAGTTTCTGAGCATGTTGATACTTGTTTGAGCACCCCAGCTG AGGGTGATTGTGAAAAGGGTGTCTCAGAATTGGCATTGACTGAAGCTGAGTCTCAAAACAGTGAATTGGAGGTTTGTGTT GGCACTTTCCTTTCAGGGAACCCATCTGAGGGGTCACTTGATGTTGTTCTTAAATTGCTGAGGAATATTGCTAGGGAACC TGAGAATGTTAAGTTTAGGAAGATTAGGATGAGCAATCCAAAGATCAAAGAGGCTGTTGCTGAGGTTACAGGGGGTATTG AGTTGCTGAGCTTTCTAGGATTTGAGCTGAGGGAGGAGAATGGGGATACATGGGCAGTGATGGAGGTTCCTACAGAGGAG CAAATAAAAGTGATTAAGAAAGCTCTAGTGTTGCTGGAACCACCACTGGTGGAACAACCTTCAAAGAGGGACAATTTGGT GACTTCAACTTCTGCTGAGAAAGATGTTAAGGCTGAACCAAAGAAGGTTGACAGACAGGTAAAAATTATGTTGATAATCC TTCTAAAAAGGGCTTTCAAGTGTGTGTATTGGATGCATTCAAGTATATGCATTATGTTTTTATAGTAGCCACTGAAGTTT TTTATCTCGGTAGCATGGACAACGAAAAAGAAAATGTCCATAAAAGATGTTTACCATTTGAGCAACTGTGCTAAGAAAAT TGTACAAAGTATACAGTATTTTTAGCTAATCAATGCTATTGGGTTTGGTGTCTAACTATAATGTAAGGGGAAAATAAATT TCAGGTTCTCTTGTGAGTGATTATCTAGTGTTGCATAGGCATAGTGAAAATTGTGATAGACTTGGTCACACTTTTGCAAG GCTTGGTACTGTAATATGTTTATATTTCGAAGTTCTGTGAGGTTAATAGAACAAACACAAAGCAGAGAACAATAATGCAG AATCCTCTTAAACATTTATCAAGAGTTTCACAAACCGAAAGGTAAGCAAACCTCCTAAGTTGAGCAAGCTATTATGGTGG TACCCAAGTATTAACACCCAAAGAGAAACACATCCTGATACAATAATTCAAAAGAAAAGTGTGAAATTTAAATATTTTAC TTTTTAGAGTTTATGTCTTCAGTGTTCATGCATTCTTGTATATATAAATCAGCTGCAGAAATAGTTTTAACTATTACTGT ATCAGAGATATTAGTATATTGTTCTTGTTTCTTTGGTCAAATCTTCTTATTCTTTGAGTATTCCTGTTTGATGCTTTAGT TATTATTCGGCAGAACTCAAATCATGTGTGTCATTGCTTTCTTTTGGTACTTCAGTATTGTGCAAAATTTAGCAGCCAAC CAATTCTTGACACTAAATATGTTTATTTTTCCCCTATAAAAAATGACTTCTACAGGTGAAGGTCTTCTTTGCTGTCCCTG AAAGCGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTAAGAAGAGAAGCTGAATTA AGGAGAAAAAAGCTTGAAGAGTCCCAGCTTTTAATCCCTAAGTCACTTAGAGAAAAGCAAGCTAAAGCTGCCAGGAGGAG ATACACAAAAACTATTATTCGGATTCAGTTTCCGGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAACCAACCA CTGCTCTCTATGAGGTTTGTCCTTTTCTACTCGATTTGAATTTCTAATTTTTTCATGTTTAGGGACGATGGGGTTTTTAA TCTCTACCTTATGATTTCGTGTTCCGGGTTTCACTTGAGCAAGTTATCATCACAAGTTGTTCTAAATGGTTCATTCATAC TGTTCTGTAGATGTCAATTTGCTGCTTGACATGAAACTTTACATTACAATGAAAAAACTGGTTTTACAAGTGCCAAGTAT AATTTGATTAGTCAACAATGGAAAGTGATAAGTTTCATTTGCATCAAATACCCTGTATCATAATGCATAGAATAGCATAA CACCAGCAATCTAATTTGAATCTTTGTTTGTTTTGAAGAACAACATAGTTATTCAACTACGGAAATTATTCGTTGCACAT TAGCAAGTTACAATGAGATAATTACAATTGCAATTTAAACCCAAGTCTCTAATTGGACAACCTCACCTTATCACTAGAGC ATTAGTGTATGTTTGGTAACTCTTCTGCAATTGATTCTGAAGGCAAAATCAATTCTGGGAAAAAGCTTCTTTGAGCAGTT TCTGAGTTGCTAAACCAAACATGTTATAGTTTCTTCTTTCATGCCCCTAATGCTATTGTCTTAGTGTTTATTCTCAGTTA GCAACTTAGTAATGTTTTTTTTAATGTGGTGGTGAAACAGTTTGTGAGCTCCGCATTAAAAGAACAAGCTTTGGAGTTTG AGCTAATGCATCCTGTGGTTATCAAACGGAGGGTGATCCCTCATTTTCCTAAAGCAGGGGAAAATGCTAAAACAATAGAG GAAGAGGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTGGAAACAGATTCTGTGGTTTTCACCGGTCTCAGAAA TGAATTGCTTGAAATCAGTGAACCACTTGTAAATAGTTAAAGCAATTGCTTGAACTATATTAATTTCTTACGTTTTTCAC ATTTTTCTTTCTTTCTCCCTTATTGGTGGGGATATAGATACAATTCACTGAACTCATATAATGTGTAATTTTTTAACAAA CCATATTAAAATCTGGTACATCTTAAAGACTGAACCAGCCTAGCTCTCATTCTTCTTTTGGTGGGTGAGCTTAGCTCAAG TTCAACTCTTCCATCACTGAGTTTAGTTGAGAATTACTATTCCAACCGCGTGAAACCATCCTTGCACTCGGCACATGCAT CTACCGATGCATGGAGAGTTCCACACAGTTTCGAATAGTAATTCTCAATTGAGATGAGTTAGACTACCCAAGTTGTTATT ACGCGACTAATCCCAAGGTCCGCCTTAGGCAAAAAAAGTAGCCTAGGCAGTTTATTATTTCCTTCCCCTCAATCAACTTT TAGACAATTCCTTACAATTATTTGAGGGATATTTTGAATTATTTCAGTTGGATCTTGATTACAAACTATTTTAAACACAA AATAAGCTGAATCATTTACGGATTATTGGTCTCTC
CDS sequence (LotjaGi4g1v0455600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGACATGAAAGACAAAGTCAAGGGGTTCATGAAGAAAGTCAACAACCCCTTCACCTCTTCATCATCTGGCAAATT CAAGGGTCAAGGTAGGGTTTTGGGATCTTCATCATCATCTTCTTCTTCTTCTGCACCCATCAATCCCAATCGCAATCCCA CTCCTCGCCTCACTCCCACCCAGAACCCTAATCCCAATTCCAAACCCCGTCCAGCTTCAACTACCAATCACGAACCCTCG CCGCAGAAAACCAATCGCAATCCGGGTGACGGGTTTGACCCGTTTGATTCCCTCGTCACTTCATCCAACAGATCGCAAAA TGGGTACTCGCTGAACGTGTATGAATGCCCCATTTGTAAACAACCGTTCCGATCCGAAGAGGAAGTTTCTGAGCATGTTG ATACTTGTTTGAGCACCCCAGCTGAGGGTGATTGTGAAAAGGGTGTCTCAGAATTGGCATTGACTGAAGCTGAGTCTCAA AACAGTGAATTGGAGGTTTGTGTTGGCACTTTCCTTTCAGGGAACCCATCTGAGGGGTCACTTGATGTTGTTCTTAAATT GCTGAGGAATATTGCTAGGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGAGCAATCCAAAGATCAAAGAGGCTG TTGCTGAGGTTACAGGGGGTATTGAGTTGCTGAGCTTTCTAGGATTTGAGCTGAGGGAGGAGAATGGGGATACATGGGCA GTGATGGAGGTTCCTACAGAGGAGCAAATAAAAGTGATTAAGAAAGCTCTAGTGTTGCTGGAACCACCACTGGTGGAACA ACCTTCAAAGAGGGACAATTTGGTGACTTCAACTTCTGCTGAGAAAGATGTTAAGGCTGAACCAAAGAAGGTTGACAGAC AGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGCGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGCT GAAGAGGTAAGAAGAGAAGCTGAATTAAGGAGAAAAAAGCTTGAAGAGTCCCAGCTTTTAATCCCTAAGTCACTTAGAGA AAAGCAAGCTAAAGCTGCCAGGAGGAGATACACAAAAACTATTATTCGGATTCAGTTTCCGGATGGAGTTGTACTTCAAG GTGTATTTTCTCCATGGGAACCAACCACTGCTCTCTATGAGTTTGTGAGCTCCGCATTAAAAGAACAAGCTTTGGAGTTT GAGCTAATGCATCCTGTGGTTATCAAACGGAGGGTGATCCCTCATTTTCCTAAAGCAGGGGAAAATGCTAAAACAATAGA GGAAGAGGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTGGAAACAGATTCTGTGGTTTTCACCGGTCTCAGAA ATGAATTGCTTGAAATCAGTGAACCACTTGTAAATAGTTAA
Protein sequence (LotjaGi4g1v0455600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDMKDKVKGFMKKVNNPFTSSSSGKFKGQGRVLGSSSSSSSSSAPINPNRNPTPRLTPTQNPNPNSKPRPASTTNHEPS PQKTNRNPGDGFDPFDSLVTSSNRSQNGYSLNVYECPICKQPFRSEEEVSEHVDTCLSTPAEGDCEKGVSELALTEAESQ NSELEVCVGTFLSGNPSEGSLDVVLKLLRNIAREPENVKFRKIRMSNPKIKEAVAEVTGGIELLSFLGFELREENGDTWA VMEVPTEEQIKVIKKALVLLEPPLVEQPSKRDNLVTSTSAEKDVKAEPKKVDRQVKVFFAVPESVAAKIELPDSFYKLSA EEVRREAELRRKKLEESQLLIPKSLREKQAKAARRRYTKTIIRIQFPDGVVLQGVFSPWEPTTALYEFVSSALKEQALEF ELMHPVVIKRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 103 | 103 | - | – | |
| PANTHER | 1 | 465 | 465 | 1.2E-220 | – | |
| MobiDBLite | 15 | 51 | 37 | - | – | |
| MobiDBLite | 52 | 66 | 15 | - | – | |
| MobiDBLite | 67 | 87 | 21 | - | – | |
| Gene3D | 174 | 260 | 87 | 4.0E-17 | – | |
| SUPERFAMILY | 177 | 256 | 80 | 1.11E-17 | ||
| CDD | 177 | 261 | 85 | 6.24557E-20 | – | |
| Pfam | 179 | 254 | 76 | 6.6E-17 | ||
| SMART | 179 | 246 | 68 | 1.3E-16 | ||
| Coils | 317 | 337 | 21 | - | – | |
| SUPERFAMILY | 326 | 439 | 114 | 6.98E-14 | ||
| Gene3D | 349 | 441 | 93 | 2.7E-7 | – | |
| ProSiteProfiles | 355 | 439 | 85 | 11.193 | ||
| Pfam | 357 | 406 | 50 | 6.2E-6 | ||
| CDD | 360 | 440 | 81 | 2.12342E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0455600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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