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Lj4g3v2603780.2

Overview

Field Value
Gene ID Lj4g3v2603780
Transcript ID Lj4g3v2603780.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF46934
8 74 67 3.83E-16
IPR009060
PANTHER
PTHR13020:SF34
9 320 312 1.30E-143 –
PANTHER
PTHR13020
9 320 312 1.30E-143 –
Gene3D
G3DSA:1.10.8.10
14 65 52 8.10E-12 –
CDD
cd14290
20 68 49 1.50E-22 –
ProSiteProfiles
PS50030
20 61 42 12.402
IPR015940
SMART
SM00165
22 60 39 1.90E-04
IPR015940
Pfam
PF00627
26 58 33 2.30E-07
IPR015940
MobiDBLite
mobidb-lite
79 122 44 – –
Coils
Coil
91 123 33 – –
Coils
Coil
134 171 38 – –
MobiDBLite
mobidb-lite
161 195 35 – –
SUPERFAMILY
SSF143503
204 316 113 2.48E-28
IPR018997
CDD
cd10461
214 320 107 7.30E-62 –
Pfam
PF09409
227 297 71 2.50E-22
IPR018997
SMART
SM00580
230 293 64 9.90E-23
IPR018997

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v2603780.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2603780.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.