Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0023600 |
| Transcript ID | LotjaGi6g1v0023600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin and WLM domain-containing protein; TAIR: AT5G35690.1 zinc metalloproteinase-like protein; Swiss-Prot: sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c; TrEMBL-Plants: tr|G7J8W3|G7J8W3_MEDTR Zinc metalloproteinase-like protein, putative; Found in the gene: LotjaGi6g1v0023600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4363860..4370193) extracted from Lotus japonicus Gifu genome v1.2.
GTATAAGCCATTTATTTCATACGTGTACCAACGAATAACACACCTTTTACTCTGGATGAATTTCTCTAGAATATTCGAGA TCGCGTGTGTTGATGCGTCAGCACACACGTTTATTTCATTTTCCAGTTCCATCTCATATTATCTCAACGACCTTGCTTCA ATTTCCCCATTCATTCAATCTTTCAGGTAATTATTCCAACCCTCTTCTTCATAATTCGATGATGCCCAAAAACTATGTAT CTTTCAGTTTCTGCTGATTTTCTTTTGAATTTCTTTATCTTTTGTGGTTTAAGGATGGTTTTGAATTACAGATTTTCTCC AATTGGTTTTGTGGAGTTGTGAGAGTTGAGAATTTTCTTGTCTTTTTGTAAGAATATTGGAAATGGGATGTTGAAATGTT TAAATCTTTTGATTGGAGTTAGTTTACATGCACAATTCTCTATAAGGGGTGTTACTGTTAGTACCACCAATAATGTTTGG TATCTTTTGATTTTCCTTTTAGGATAATGTTAGTAGTCAGGGTTGTTAATTGCGGGTAGCATAGCGTCAAGCCCAAAAAA CGTTATTTCAAGCGCTATTGCAGCAAATAGCGTCAAATATTGGAGTAGCGGTGAACCCCCAGGTCCAGGGTGCTCCGTTA TAGCGCTATTGCGCTGCTATAGCGCGCTATTGACAAGTCTCGTTAGTACCACCAATAATGTAATATGTGGCTAATGACTA GATGCGTTTTGATTCTTATAGATCAAATATGCAACCAGAATCGTTTTGTCGAATTTGATTGTGTATGTATGTCTGTATGG AATTATTAATTTAGCTTGATTATGGATTGTGGTTGAATTTGTGAGAATTTTCATGGGTAGGGTTTTGCAAGTGCCCTTAA AAGAATCTTTGTAATTGGAAACGCAGGAAGGAATATTGGAAATGGGATGTTGAAAAGTTTATAGCTTTTGATTGGAGTTA GTTTACATGAAAAATTCTCTATAAGGGGTCATCCCATACACACACACACAAACACATAGCCACATCTATGTTTGGTGTCT TTGATTTTCCTTTTAGGATACTATTAGTACTTAGTACCACCAATAATGTAATCTGTGGCCAATGACTAGATGTGTTTTGA TTCTTATAGATCAAATATGCAGCCAGAATCAAGCCTGCTCGACATCTCTGTTACGTGGAGAGGAAAGAAGTTTGTTGTGC AGACGAATGCAGGCGCCTCTGTGAAGGATCTTGGACATGAATTGCAAAAATTAACAAATATTAAAGAAGATACCATGCGG TTCATTGTTCCAAAGATTTCTGGAAGAACGTCAAAACTGCTGGCTCCCTTTTCAACAGAGCATGCACTTTTAAGTTTGCA GGAAACTTTCATTGCTGAGGTACTGTCATTTACATATACTTTGCCATCTGGATTAAGGTTTAGAAACATGAAAAATATGG TTCTTAGTGTGATTCACATTAACTTAGGTTTTATTGTTACATTAAACTTTGCATTATGTTAGTTTGTCTTTCCTAGTGAT TTTATAATTCTGTTGCACTTAATATCTAAAATACAAGTTTAAATGTTGGTCTTATTTCAACTAACTATCATTGAATGCTT TGTAAGCAACCTCTAATCCCATGATATCATTGATATGTGCCTGGTTGCTAGAGAGTGGAGACACATTCTTCAGCAGACTT GAGTGGCTGTGGTTATCTTTATATGCTATTTTATCAGCTCTATCATGTTTATTCCTTCCTTTTTGGACCACTTTGGACTC CATTAATAAAATCTGGAATGAGAAAACCATATCTTGGTATCTCTTGTTAGGATATTTGAATCAATGATCAAATATTGTGA ACTCTTCTAATTAGCCCTTTTGATGATGAGCAAGGAGTTACTTTGGAGTGGAAGTGTCAAACAACAATGGTCCTTTTGTT ATTATCCTAATTCATTTTCTGCATATATGCGGAGTCATTGAATTGTTTTTTTCAAATATAAAGTTCTTGTTTATTCAATT TATGCTTACACATAGCACTATAGTACCATTGGAAATGGTATGTTTACTAAATCGTTTGGCCTGTTGTTTCCCTAAGTTGG ATTTAAATGGTCTTCGGGACTTGATTGGTGGCATCATTTGGTGCATATAGCTAACCCGACTTGGTGGGAAGTAGCTTCAG TTGTTGTATTGTTACTCTAAGTTGCTATTATTCTCTCTTCAGGCCAGGTCAATTATAATGATGGGTGTGTCAACAAATGA GGTTGAAGAAGTTCTTCAAAATGCAAAAGCAAATTTAAGAATAGCTGGATTTGAGGATGAGGAAAAGAGACTAAAACAGC GAATTTCACATGGATCTCGTCTTTCATTGAAACTTCCTCAAGGGCCTTATATATTTCGTGAATTTCGCACACTTGAACTT CCAGGAGTAGAGGTACTATTTTACTATATATGGTCTTTGATTACTAAAGTTGTGCTGAATTAAAGAATCATGCATCTCTC ATATTTATCATAATAGCTTCTTATGCTACATTTACTCTATTACTAAGGAACAGTAATATAGTGTTTCGGTATAAATTACT AGGGAATAGTAATATCATGTTTTGGTATAAAGCATCATGCATTTGCTTTTGAAATGGAAAGTGTAGCCTCTGATATGATA TTTTTCCTGGATAACTTAATGTGTTAATGATTTTCCATCACATTCTTTGCCACCCATCTCATGATGTAAAGTTTTATGGA GTTTTCTTCACTGATGATGGGCAACATTTTTTTGCTTTCCATTGCCTTCAGCTGAATCCTCCTCCTTCTGAGGCACTGAA AAGAATGCACCTGCTTGCTGCAGATCCGGGGATCGTTGCTATCATGAACAAGGTATACACATGAATTTTGACATAGGTAA TTATGACTGTCAGAAAGACAGTGTGGTGCATGTTCTGACAAATGTTCAATTTGGATCTTATAGCATCGTTGGTCTGTAGG GATTATGACTGAGTTGCCTCCCATTGGTTATGTTGGTGTGAGCCCAAAATGCCTTCTTGGTTTTAACAAGGTATTGGATA CTTCAGGATTATGCAGCATGACATTTTAGGAATCCATATTTATAGTTTTGTTGAGTTTTTTCCTTTAATTCTTATTGACA GAATCAAGGGGAGGAAATATCATTGCGTCTTCGAACAGATGACCTCAAAGGTTTTAGGAAATATCAAAGCATCAAGAAAA CTCTACTGCATGAACTTGTAAGCTATAACCTGAACAAGTATCATATGGTTTTTTCTTGGTCCATACTATTTTAATTTTAA ATATAAAGAAGTGGAAAATATGAAGTTTTGTCTATTTGATAAATAAAGTCATTAAATTAATTTACCTTTTATTTCAGGCT CACATGGTACACTCTGCACATGATGCAAACTTTTATGCTCTGGATAAGCAGGTGCGTGAACATGCTGAAGTGTTTGGCTT TCAGTTCATTATTAAGTTTTGATTTAGTCCTGTAAGTTGATTTAATTTATTTCTTTGGCAGTTAAATGAAGAAGCTGCTA GTTTAGATTGGACTAGATCTACAGGCCACACTTTGGGTGGAGTAAGGATTTCTGATATCTATGATGATGATTTCATACCT AAAAGTAGCAATGTTCCTCAGAAGCTTGGAGGTAACAGGACAGATCAGCTAAGTGCTCGTGAATCTTCAGTTGCTGCTGC TTACCATCGGGTGGCTAATGTTTCTTCTGACAAGTCGGGAGAATCTGAAGTAAATCAAGAGCTGGATCTTGATTATTCTG GTTTTAATATGAATGAAGAACCTGATTATTTGAAATCTGCCTCCAAAGATATCGACATGCCCATCATTGTTGAGAAAGGA CTTAATGAGCCTGACCCTGATGATCATATTATCAAAGGAATGGAACATGAGCCTGACCCAGATGATTCTTGTCACGGTAA AGCTGTTGTTTTTGCTGTTTGTTCGGGAATTACTGATAGTAGAACTGTATTTGAACCAAAACCTATTGATTTTTGTGAAG CAGTGCATTCTCAAAAAAGTGCCGTGAATTCAGCTGCAATATACGCATCTAAAGATCCTGATCCAAACAATTCAGAGACG TCATTGAAGTCTATTGTTCCAGCTGCAGGTAATTGTTTTCCAGAAATTTGTATTGTATGTTCGGTTTGGCGTTGGGGCAA ACGCAAACGTGATTTCATGTATCTCAATATTAATGGATAACTAGAATTTGCCACCCCGAGTTTAACGTGGATCAAAGAAG TAAGATTTTGCCACATTGAGTTCCATAGAAATCCGAACACACGTAGTCTAGTTAGCATATCCTGCCAAGGATGGGCATTC ATAAACCTCCGAATGACTACTTGGAGGCAGAAAATAAAATTTTTGAAGTTAAAACTCAGAATATCTGTTGCTTTAAGAAA CTCACCTTGGAAATAAAGAAAAGAAAAAATATGATTATACTTGGTTGAAAATGAACTGAACAGATTGGGGAGAGTTGCGA GGGTTTTCCCTTTCATAACGGAACACTTGCTAGGTCTTCTCAAAATACCTTTATCTGAATCCCCTCTTTACCATTACTTT CCACTTATATATTTATTTATCTAGCTAATTCTCTCAAACTAACTGTTTCAACTGACTAAACAAACTACTTTCTCTTCCTT TATTTCTTCTAAGAAACTATTCTTCTGTCGTGATTATTGATTGATTCATTCAGGTTGTGTTCCATACTGTCCTTGGACAT TAAGTTAATCAAAGCCATTTTTGTAAAAAACCTGATCATGATGAATCGTATGCAGAAATAAATGTGATGGTAGAACCAGA TCCTGATAATCTTGTTCCCACTCCAAAATTATCTACACCGCAGTCTGATGAGCCAGATCCTGATGACGAAGAACTCCAGA GGATCAATGGCACTATGACTGCTGTTTGTAATCGTTTGTTGAAGGCCCTGGAAGTGCTGAAAAGTGAAGTTAGTCCTATG CAAACTGCTTCAATTCTCCAAACTCTCTTAAAAGTTATTAGGTACGTTTACTCACAAGAAAATTGAATTTGAGTGATCAT GGATGTTGGATACCTTTTATGATCTTGCTTTATAGCTTTAGATTTAAAAAGTTATGAAAAATAATTTTATTAATTCCATG TGTGGTTATCACTTATCACTTTAAGCATTCGTTCTCCCTGTATTAATATTGCTGTCTGATTGCAGGAATGTGATTGAATA CCCTGAGCTGGAAAAGTACAAGAGATTGCGGAAGGTATATAATCAATATTACCTCTTGCCATGTTGCCTGATACTTTATC CGAAGAGTTCCCTTAAAATTCTTACATTTTTATATAATATACATTCTTTTTGCAGACTAATCCAGTCATTGAGAGGGATA TTGTAAATAATAAAGGTCTGCATCTTCTGACATTTGGATTTAAATTTTAGTTAAGCTTCTTAGATAGAACTGCCATCTAG AATATCAAGTTTCCTATGTGCAATTTTTTGGGAAGAATTGGATATTAGTTTTGTTTCAATGTCCCCTAATACTTGATGTA TATGTGCTCAAACTTCAAATTTTACTGCTACAGCTGCCTTGGAATTTCTCACGGTGGTCGGCTTCAGCGAAGATGTTATA TTTGACAATCTTGGGAAGGCAGAAGCATACTTGGTGCTGAAGCGGAATGATCCTGGCTTATTGTGGCTAGCTAAGTCCAC CCTTGAATCAAGCTGAACTTGGTAGCTCCGAAAACAGTTCTGAAAGACAAAGCAATATTATATGTGGAAGTATACTGTAT ATAGATGTCCATTGTATGTGTATGCGTTGAGGAAAGAACATTTTGTATTGTCATTTACGTGCCAAATAGGTGGTATTCAA CATAGAAATATTTTTGGGGAAGCAAAAGGACTACATCTGATGTGGAAATATAACAGTTGCTCATTGTACAATGCTAGATG TCATTCTCTTGTCTTTTGGTGATTGTGAATAAACTAGTTAATAAATAACACATGAACTGCTTTAGTGCCTGTTATGTTAA CGGTTGGCATTTGAGAAATCACATTTTTTTACAAGACAGATTGTGGCATTTGGCTGCACTTATCGACGGTGGGAAAGATC TCTTTGCCATTGCTCTTCTCCCCTCCCCATACTCTTGTCCAGGTAGCGCCGGAGAGACACACTACTTTTGAAATTTCCTT CATTAAAAGTTCTGCCTGTCACAAGTGGTGCTTCACCATTGCTGGTGCCTAGATATGACAATCAAACTTGAACATGCAGT AACTCTAAGCCTGATCCCGACTCTGATGGAAAATTTCGTATCATATAAAAATATAAAAACAAAAAGGTGTTGGGCCTAAA GGAGATTTTATAAA
CDS sequence (LotjaGi6g1v0023600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCTCTAGAATATTCGAGATCGCGTGTGTTGATGCGTCAGCACACACGTTTATTTCATTTTCCAGTTCCATCTC ATATTATCTCAACGACCTTGCTTCAATTTCCCCATTCATTCAATCTTTCAGATCAAATATGCAGCCAGAATCAAGCCTGC TCGACATCTCTGTTACGTGGAGAGGAAAGAAGTTTGTTGTGCAGACGAATGCAGGCGCCTCTGTGAAGGATCTTGGACAT GAATTGCAAAAATTAACAAATATTAAAGAAGATACCATGCGGTTCATTGTTCCAAAGATTTCTGGAAGAACGTCAAAACT GCTGGCTCCCTTTTCAACAGAGCATGCACTTTTAAGTTTGCAGGAAACTTTCATTGCTGAGGCCAGGTCAATTATAATGA TGGGTGTGTCAACAAATGAGGTTGAAGAAGTTCTTCAAAATGCAAAAGCAAATTTAAGAATAGCTGGATTTGAGGATGAG GAAAAGAGACTAAAACAGCGAATTTCACATGGATCTCGTCTTTCATTGAAACTTCCTCAAGGGCCTTATATATTTCGTGA ATTTCGCACACTTGAACTTCCAGGAGTAGAGCTGAATCCTCCTCCTTCTGAGGCACTGAAAAGAATGCACCTGCTTGCTG CAGATCCGGGGATCGTTGCTATCATGAACAAGCATCGTTGGTCTGTAGGGATTATGACTGAGTTGCCTCCCATTGGTTAT GTTGGTGTGAGCCCAAAATGCCTTCTTGGTTTTAACAAGAATCAAGGGGAGGAAATATCATTGCGTCTTCGAACAGATGA CCTCAAAGGTTTTAGGAAATATCAAAGCATCAAGAAAACTCTACTGCATGAACTTGCTCACATGGTACACTCTGCACATG ATGCAAACTTTTATGCTCTGGATAAGCAGTTAAATGAAGAAGCTGCTAGTTTAGATTGGACTAGATCTACAGGCCACACT TTGGGTGGAGTAAGGATTTCTGATATCTATGATGATGATTTCATACCTAAAAGTAGCAATGTTCCTCAGAAGCTTGGAGG TAACAGGACAGATCAGCTAAGTGCTCGTGAATCTTCAGTTGCTGCTGCTTACCATCGGGTGGCTAATGTTTCTTCTGACA AGTCGGGAGAATCTGAAGTAAATCAAGAGCTGGATCTTGATTATTCTGGTTTTAATATGAATGAAGAACCTGATTATTTG AAATCTGCCTCCAAAGATATCGACATGCCCATCATTGTTGAGAAAGGACTTAATGAGCCTGACCCTGATGATCATATTAT CAAAGGAATGGAACATGAGCCTGACCCAGATGATTCTTGTCACGTGCATTCTCAAAAAAGTGCCGTGAATTCAGCTGCAA TATACGCATCTAAAGATCCTGATCCAAACAATTCAGAGACGTCATTGAAGTCTATTGTTCCAGCTGCAGAAATAAATGTG ATGGTAGAACCAGATCCTGATAATCTTGTTCCCACTCCAAAATTATCTACACCGCAGTCTGATGAGCCAGATCCTGATGA CGAAGAACTCCAGAGGATCAATGGCACTATGACTGCTGTTTGTAATCGTTTGTTGAAGGCCCTGGAAGTGCTGAAAAGTG AAGTTAGTCCTATGCAAACTGCTTCAATTCTCCAAACTCTCTTAAAAGTTATTAGGAATGTGATTGAATACCCTGAGCTG GAAAAGTACAAGAGATTGCGGAAGACTAATCCAGTCATTGAGAGGGATATTGTAAATAATAAAGCTGCCTTGGAATTTCT CACGGTGGTCGGCTTCAGCGAAGATGTTATATTTGACAATCTTGGGAAGGCAGAAGCATACTTGGTGCTGAAGCGGAATG ATCCTGGCTTATTGTGGCTAGCTAAGTCCACCCTTGAATCAAGCTGA
Protein sequence (LotjaGi6g1v0023600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFSRIFEIACVDASAHTFISFSSSISYYLNDLASISPFIQSFRSNMQPESSLLDISVTWRGKKFVVQTNAGASVKDLGH ELQKLTNIKEDTMRFIVPKISGRTSKLLAPFSTEHALLSLQETFIAEARSIIMMGVSTNEVEEVLQNAKANLRIAGFEDE EKRLKQRISHGSRLSLKLPQGPYIFREFRTLELPGVELNPPPSEALKRMHLLAADPGIVAIMNKHRWSVGIMTELPPIGY VGVSPKCLLGFNKNQGEEISLRLRTDDLKGFRKYQSIKKTLLHELAHMVHSAHDANFYALDKQLNEEAASLDWTRSTGHT LGGVRISDIYDDDFIPKSSNVPQKLGGNRTDQLSARESSVAAAYHRVANVSSDKSGESEVNQELDLDYSGFNMNEEPDYL KSASKDIDMPIIVEKGLNEPDPDDHIIKGMEHEPDPDDSCHVHSQKSAVNSAAIYASKDPDPNNSETSLKSIVPAAEINV MVEPDPDNLVPTPKLSTPQSDEPDPDDEELQRINGTMTAVCNRLLKALEVLKSEVSPMQTASILQTLLKVIRNVIEYPEL EKYKRLRKTNPVIERDIVNNKAALEFLTVVGFSEDVIFDNLGKAEAYLVLKRNDPGLLWLAKSTLESS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 447 | 403 | 4.5E-240 | – | |
| Gene3D | 49 | 140 | 92 | 7.5E-12 | – | |
| CDD | 54 | 135 | 82 | 0.00156925 | – | |
| Coils | 147 | 167 | 21 | - | – | |
| ProSiteProfiles | 176 | 368 | 193 | 38.108 | ||
| Pfam | 198 | 367 | 170 | 1.6E-44 | ||
| PANTHER | 455 | 628 | 174 | 4.5E-240 | – | |
| MobiDBLite | 483 | 508 | 26 | - | – | |
| SUPERFAMILY | 518 | 626 | 109 | 4.58E-17 | ||
| Gene3D | 524 | 617 | 94 | 2.2E-15 | – | |
| CDD | 527 | 626 | 100 | 2.1768E-34 | – | |
| Pfam | 540 | 614 | 75 | 8.2E-14 | ||
| SMART | 542 | 611 | 70 | 2.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0023600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…